Chr:
Chr3
Start:
11277525
End:
11288079
Strand:
-
Ref_name:
OSA-LNCN3638
Sequence
(OSA-LNCN3638.1):
CUUGUAGCCUAAUGGUUACAAGAGCCUCAGUAGCACCUGAGGUCCUGGGUUCGACUCUCCAUGAGAGCGAAUUUUCCAGGAUUCAACAGCGUUGUGCUUUCAGUGGUAGGCGAUGUUUGUAAACCUGGUUAUAAGUCCUAUCCUAUCCGAGGUGUUUGGAGCUAGCACAUAAACUUCAGCUGACACCAUAAGAGGUGUAUGAGAUUAUGUACUAUUUUCAGUCAAGAAUAUUUGAUGUUAACGUUGUUAUAUUAGUGGCACUACUGUCAAAUUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
47.36%
ME_num:
MEP:
34.35%
HE_num:
HEP:
18.09%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.87
Avg Expression:
13.91
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.87712329452104 | 4.92331836155999e-29 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.88593825861834 | 4.0797953265071e-32 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.17006849144252 | 6.4068584102459e-30 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.68810432836788 | 6.16349122888516e-15 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.86141296931068 | 9.30566783802815e-23 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.11260184994999 | 1.28399215975471e-20 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.32868264844703 | 6.80584757614692e-09 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.61692197933626 | 4.83495620927098e-29 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.54720615966291 | 5.99060067874122e-11 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.23447776599347 | 4.57848626729026e-30 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.36447111961622 | 1.77781683161752e-36 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.38104845037684 | 4.28715082082672e-29 |
| 13 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.18509148823701 | 0.0106126229429817 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.2154963247968 | 3.67685519654943e-41 |