Chr:
Chr3
Start:
11095227
End:
11096144
Strand:
-
Ref_name:
OSA-LNCN3632
Sequence
(OSA-LNCN3632.1):
CUUGAAGCAAACAAGACCAACAAUCCCGCUCUCGCUCAGCUGGGACUCUAGCUCCCGUAUGAACAAAUUUGCAUCCAUUAUCUUUGCCUGCACACCCUUUUUUUCCCCUGAUUACGAUGCAGGUUUUACUUUAAUUUUUAUUAGCAUGUUUUUAAAGCUGCUAGGAGCAAGUAUGAUAACAAACUAUAAGAGCAGAUACGAUAGCAGGCUAUAAGUCAGCUACAAACACAUAUCGAGUAGAUAAAAUAGAAGAGAGAAGAGCAGCGAACUAUAUAUUUAUAGUCAGCAGCACGGACUGAAAGACGUAAUGUGUGUAUAACAGGUGGCACCAUAUACCAAUAGUACACUAGUAUAGUAUAUUUUUAUAUGUAACUAUUUAUAUGUAUUGGCUAUUAAAUUAACUAUAAAUGGUUUGACUAUACUAUUACACUUGCCCUAAGUCAACCAUGAACAAAUGUGAAGGAGACAAGAGAGAAAAGAACACAGUGUGAAUGUGCAGGGCGUGACCGUAGCCUCCUCCCAGCGAUGUCGCCGAGGACCGCCAUCACCGGAGAAAAUCCGCCGCCACCACCGCUCGGAACCUUGCCGCUGCUCCGCUGGAGAGCUCGUCGGCUGCACCUCAAAGGAGCGCCGGCGAGGAGAGGCGGGGUCGACGCCGAGAGAGGAGGGGCCCGGCGCCGCUCCAGAUCCACUCCAGUCCCCCACUCUCGUUGAGCUCGGCGAGGUGCGGCGUGCGGGGCGAGACGAGAGGCGGCGCGCGGAGAAGGAGGAGGCGUUGUCCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
54.07%
ME_num:
MEP:
34.76%
HE_num:
HEP:
10.98%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.83
Avg Expression:
7.57
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.47589787517369 | 0.0131307423849353 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.33814235133917 | 0.0179973899966906 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.496460337984 | 0.0136264032010389 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 1.9165781977119 | 0.000462990468778275 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.79355323892266 | 0.00137198903836065 |
| 6 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.14897177506245 | 0.0024045629335659 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.19817156711151 | 1.25326373805101e-05 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.75597685567412 | 0.000557513108448494 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.58901361063269 | 0.00328980657594993 |
| 10 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 2.73007964775782 | 0.0131806035476729 |
| 11 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 2.72998286417027 | 0.0130415101163397 |
| 12 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 2.72995522153749 | 0.0132202584792092 |
| 13 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -3.73994973427859 | 3.57347615692739e-11 |
| 14 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.58841194216342 | 2.89550496801267e-13 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.26363702532393 | 0.0276429096537157 |