RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN3630

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr3

Start:

10931896

End:

10933255

Strand:

-

Ref_name:

OSA-LNCN3630

Sequence
(OSA-LNCN3630.1):

CAUGGCGUCACCUAUAAUUUUCGCUGGCGGUUAUACGUGAAAACCGCUACUAAAAAUGUAACAAGGGGUGAGGGGUUACAGACCGCCAGCGAAAAUCGGUUUUCACUGGCGGCCACGCUAAGAGGUCCGCCAUUAAAAAUUAAAAAUAGCUUUAUUUUCGCUGGCGGCUACUCUAAGAGGCCCGCCAUAAAAAAUUGGGUUUUCGCUGGCGGCCGAUUUUCGCUGGCGGCAGCUAACUUGCACCUACUGUGAAAAAAAUAUUCCCUCUAGUAAAAUCUCCUCCAAUGUUAUCCCUUCCCAUUCACCUCUCCCAUUCCUUCUCUUCCUCCUGCAGCCUCUCCACCUCCUGUCCUCCAGCCUCUCCUCCUCCUUCUCCUCCACCACCUCCUCCUCCUGUCGGCGUAGGAAACACAGCGGAUUAGCGACGGUGACUACGGCGACCGGGAGGGGCCGGGAGGGGUGCCGUGAUCCACGGCCGGGAAGGGCACGGGCGCAGGUGCAGGCGUGGCGGAUCCGGCCACCGCAGAGCCGCGGGCGGCGGAUCCGGCCGCCGGAGGACCGCGGGCGGCGGAUCCGGCCGCCGGAGGGCCGCGGGGAGCGGAUCCGGGCGCGGGCGGCGGCGCGCGGCUGAUCCGGGCACGGGCGGCCGCUCUCGGACGCCGGCGGCGGUGCGCGGCGGAUCCAGGCGCGGGCGGCGGCUAUCAGGCGCUGGCGGGGAGGCUAGAUCUGCCGCCGCCAGAUCGGCGGCGCCUGGCUGGUGGUCACCGGGGAGCUGCAUGCUAGCUGCAGAGAGGAGGCACGACCGCACGAGAGGAUCCUCUCUUCAGUUCAUGCGUUUUGUUCUGAUCUGUUUGCACGUGAAACCAUUUCUGCAGCGGGCUGCGGUGGAGGCUGCGGCGGGGCUCUGUGCAGCGGCGGUGGAGGCCGGCGGGGCUCGGCAGCGGCGUCGUCGAGGCGGAGGCAGUGGAGGCUUGAAUGCUUGAAUUUUUUUAUGCUUGAAUGCUUGGGGGAAUAGAAAUUUUUGACUGUAAAUUUAAAUUGUGCUUGUGUGAAUUGAAUUUUUUGACUGUAAUUUCUGCUUGGGUGAAUGGAAAUUUCUGUGGAUUUUUGAAUGGUGGAGCGUCGACGGAGGCAGACGGAGCGGUGUCGCUCCGUCUAUUAUUUUUUUUAAACUUGGCCACGAUUAACACUGGCGGGUGACACAGUGUUACUCGUAUUUUCGCUGGCUGGCCAGGGAAAAUGUGUCUUUGCUGGCGGUUGGGCUUAAGACGAC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

12

LEP:

2.44%

ME_num:

371

MEP:

75.41%

HE_num:

108

HEP:

21.95%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

crown

Tau :

0.66

Avg Expression:

8.20

Tip: OSA-LNCN3630 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN1.519614261891570.0401760901756991
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1.48019794002250.0296078015752654
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN1.937148227408260.00359769259421559
4WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h1.927780237000110.0354408455995381
5Nipponbare // panicle // AM--/--Nipponbare // panicle // PM-1.354438928112130.0308912983583998