Chr:
Chr3
Start:
9966928
End:
9967505
Strand:
.
Ref_name:
OSA-LNCN3614
Sequence
(OSA-LNCN3614.1):
AAGAAUCUAAAGAGAGCGCUUUUUUUAGUUCAGAAAUCGAUCGGCACUACUGUUGAUCGAGUACUGUACAUACGUAGAGAAAACGUGCUAUCAGAAGAGUUCGACUAGAUUUUUCAUUUGUUCACUCGCCCAAAUUCCAAGCCUUAUCGUUGGAAUUCCUAGCUUUAGCACAAGAAUCGGCUGCGCCCAAUUAUGAAAGCGAAGGUCUCAAAAAUGCCAGCUUGCUAUCAUUUUACCGAAUAUGCAGCUAUCUCGAUCGCAUCCAGGACUCCAGGCUCUAUAGGGUCACACAGAUGACAUGACAGUGGAUGAUUCUAGCUUUCCUCUUUGUUGUUUUUACUUUUACGUUUUGGCGUCUUUAUUAUUCUUCCUUUCCGUAGGCAACAAAAUUGUACAUGUUAAUUUGGGGAUCCUUGUCAUUAAUUUGGGCAUGGAUAGAGUCGAGUGCGUUGCUCGCUGUUAGGUUUUGGUUUUGGACGGUUCGGCGGUAGCUCUUUUGUUGAUCUAGCAGCAGUCGGUAACGCUUAGCGAUGGCCGGUCCAGUGCUAACUUUUUCUUGGGUUCUAUAAAGACGUUGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
95.12%
ME_num:
MEP:
2.85%
HE_num:
HEP:
1.83%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.98
Avg Expression:
1.43
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | 9311 // leaf // control--/--9311 // leaf // salt | 3.80170835913901 | 3.20722229804084e-08 |
| 2 | 9L136 // leaf // control--/--9L136 // leaf // salt | 4.05113556522678 | 9.10044984986898e-13 |