Chr:
Chr3
Start:
9843955
End:
9845628
Strand:
-
Ref_name:
OSA-LNCN3613
Sequence
(OSA-LNCN3613.1):
AGGUCAAAGCAGGAUCAUAUCAGAAAUGAAGCAUGCAGAAAAAUACAACAUGCCUACAACAACACAGGAAUCAUUUGUCAAGUGUGCAGUGGGAAAAACUUCUACCAUAACUAAGCAUUUUAGAUGUGCUACACAGAAAUAACACCUCAACUAUUGCAGAAACAAAAACAUUUUAAAGGAUGACUUAUUUGCAAGGGUUUCUUUUAUGGCAAUAGUGGUGAAUGUUUCUAUAGUUCCUGGAAGAGACUAGUAGUGUAAACUGGCAACAUACCCUUGGUAGCAUCAGGAAGACGGCCCUCAGGUGGGGGUGCAGGUUUGUCCUGCAAAAGGUCAAGGAAGGAUGAAAACAAUCUCAAUUAACAACACAAUGAAUAUAAAAUGGAACAUAAAAAAACACUUAAUCAUCUCUCCAUUUUAGAAAUAAAUAUAAAGAUGAGCCAGAUAUGCACAAGCAAAUUUUAAGCACUGUAUAAUGUUACAUAUAUGAUAUAUAUUACUAUCAUCGGUGAUAUUGUUGAAGGUGCAUAAUAAUUACUGAACAUUAUGUAUUUAUAAAAAAAGAUAUAUCCAUAACAGUUAUUAUAUCCUAAAACAAGCACCAAGUCACCUUUCUAAAGUUUCCUAAAACAUAACAUAUAGAUAUAUAUCGGCCCACUGUUUUUUCAUUAAGCUUUCCAACUGCCUUCAGAUUGAACCCCUAAUUAUCAUUUUAUGUCAAUGCAAUAAGUUGGGAGGCCCUAAUAUACUUUAUCUGAACCAACUAGACUUGUAAAUAAUGGAUGCUUUCUUAAGUUUAUAUUCACAAAGCACAACAAAUAUCCUACAUGGCACAAUCCAACAGAUCAAACUAUAUCAUGCAUAGAGAACGGAAACAACCCCGGUCCCCAAGGCUUCUUCCAUUAAUUCAGAAAAUAAUUGUUUAUUUGUCAUGGUUUAGAGUAUGACAUCGAUUAGGAUGAGAACUACUAUCCUGAGUAAAAAAUAAAAAUGAUAAAAUGAAAGAUCAGUAACUAUCAAAACCCUGAACAGGGAAAUGCCGCAAACAACCAUGGUAAAUCAGUGACUACUUUGAGAAUAGCCAGACUACAAAGAAAAAGGAUAAGGCGACAUCCUUAAAAAUAAUAUCCUUGUGCAUGAAUGGAUAACAAACUUCACACCAUACAGCAUGCAUGAAAAUGAAUCCUAUGUGACUCAACUGACACAAACACAUGAGCCAACAAUAACUAAAAAAUAACAAUUAGCAUGUUUAUGGUAAAUAAACAAGGUCUUACGGAAAUGUAAAUGAGGUCACGGAUAUUUAACCACCUCUAGAUCUAGAGGAUGUCAAGUAACGCCGACCCACCAACAAGAAUACGAACAAACCCAAUUUGACGGUAUUAUCCGGGUAUAUAAUAUAGAAAAGUCCGUACUGUUAAAAUAUUAUUAUACUGCUGGCCUUAGAUUAGUGGUGAUCACUUUGUCUACUCUCUAGGAACCACCAACCCCCAGUCCCCACAAAUGAAAAGCACACACAUCAAUGGAGCACUAACAAAUUACGACUAAUCUCGUGGCAUCACAAACAAAUCCACACGCCAUCCAGUUUACCACUGCCAUAUCAAGGCCUAACUAGAACCCUGAGAAAAACCCCAAGAGUUGAAAGGUAAUAGGAAAUCUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.41%
ME_num:
MEP:
17.89%
HE_num:
HEP:
81.5%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.53
Avg Expression:
21.83
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.11103832554788 | 1.08758835598869e-36 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.28425983732314 | 7.98260505277156e-22 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.19602132745137 | 1.29650764327209e-35 |
| 4 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.11354517925537 | 0.0246809580622129 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.63369560260547 | 5.29973336376555e-08 |
| 6 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 1.00015703436355 | 0.000108650616631781 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.3369709804592 | 0.00191194706242535 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 1.52530587204208 | 0.000413708230493487 |
| 9 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.383318288086 | 1.36033613599909e-56 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 2.33449833758757 | 2.95575963843702e-30 |
| 11 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 1.04530429488321 | 3.6221508217274e-08 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.0548989426085 | 1.18734252973894e-16 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.52694682003981 | 9.17243936604399e-05 |
| 14 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 2.24531153929331 | 2.71720554898466e-19 |