Chr:
Chr3
Start:
9405691
End:
9406616
Strand:
-
Ref_name:
OSA-LNCN3605
Sequence
(OSA-LNCN3605.1):
AGCGGCGCUUCCACGAUCUGAAAACCCAGCUUAUCACAAGAGAGAGUAGGAUGUGAUCAUCAUCAUCAUAAGACCGAGGUCAGGGCCCCGUUCCGUCGGCGAGAGCGAGACACCCGCGGCAUCACGCCAACUUGCGCUACGAUACGCGGAGCGGAGAGCGUCCUUUGGGCGAGCGAAAGGCCGGCUUAUCGAAACGGUGAGACGCAGAUACGUGGGCAACGGCCAACGGGGCCAAGGUCAACAAGGAUCGAAUUAACAAGGGUUAUCCGCUUGUAAGCAUCGUGUGAUCGUGUUUAUAUCGGAUAGGAGUAGAUAGCGGUGAUGAACAUGAAGAUCCUCGAGUGGGAACGUCAUGGAAAGGGAGGGCUUAAAAUGAUGAAGGCUUGGAGCCAGAAAUGACGAUGCUUGCACCGUGUUUUGAUCCCAAUUUUUUCUUCAAAAUCUCAACUUUUUCCAUCACAUCAUACUUUUUUACUCACAUAAACUUUCAACUUUUCUAUCAUAUCGUUCCAAUUUCAACAAAACUUCCAAUUUUGACAUUUCAACUAAAAUUUUAAUUUUGAUGUGAACUAAACACAGUGGUGCAUUAUGCUCGUGAGAUCAAUCAGCUGAGAUGGUAUCACAAGAGGCAAGAGAAAUCCAGGGUGGCCAGCUGUAUGGUAUAGCCAGGAGCCAGAUGUGAAGUAUUCCAAACAAUUGUCACUUUCAGGAAAAGCAUUACUACAAAGCCGAUGGGUCAGCUUUCACCCAGACAUUUCGUUAGGGUAAACAAUUUGCAAUGUGCUUGUCUGAAACAUGGUACACCGAUAAUAAUCAAACCUAUCCAAACGGCGUUUCGACACAUAAAUAU
Sequence
(OSA-LNCN3605.2):
AGCGGCGCUUCCACGAUCUGAAAACCCAGCUUAUCACAAGAGAGAGUAGGAUGUGAUCAUCAUCAUCAUAAGACCGAGGUCAGGGCCCCGUUCCGUCGGCGAGAGCGAGACACCCGCGGCAUCACGCCAACUUGCGCUACGAUACGCGGAGCGGAGAGCGUCCUUUGGGCGAGCGAAAGGCCGGCUUAUCGAAACGGUCAACAAGGAUCGAAUUAACAAGGGUUAUCCGCUUGUAAGCAUCGUGUGAUCGUGUUUAUAUCGGAUAGGAGUAGAUAGCGGUGAUGAACAUGAAGAUCCUCGAGUGGGAACGUCAUGGAAAGGGAGGGCUUAAAAUGAUGAAGGCUUGGAGCCAGAAAUGACGAUGCUUGCACCGUGUUUUGAUCCCAAUUUUUUCUUCAAAAUCUCAACUUUUUCCAUCACAUCAUACUUUUUUACUCACAUAAACUUUCAACUUUUCUAUCAUAUCGUUCCAAUUUCAACAAAACUUCCAAUUUUGACAUUUCAACUAAAAUUUUAAUUUUGAUGUGAACUAAACACAGUGGUGCAUUAUGCUCGUGAGAUCAAUCAGCUGAGAUGGUAUCACAAGAGGCAAGAGAAAUCCAGGGUGGCCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
82.32%
ME_num:
MEP:
16.87%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.91
Avg Expression:
1.75
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 2.57978482013211 | 7.95988748405927e-05 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 2.23806555922792 | 0.0160714539878937 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 6.58247493783756 | 4.71117964538115e-08 |
| 4 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 7.02383123177496 | 4.62494013664028e-05 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 7.6018506747642 | 0.000112731434981505 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 6.51635230304156 | 0.0027780699233229 |