Chr:
Chr3
Start:
9086481
End:
9093416
Strand:
+
Ref_name:
OSA-LNCN3596
Sequence
(OSA-LNCN3596.1):
UGUGUAACUUCAUCAUAGCAGGGCUACAUGAAUUUCCCACAAGCCUGUUACCUACAUUAGAUGAAAUGCUGUUCUCUUGUUCGUUGAGCAUUCUACAUCAUCUAAUGUCGGUUGAUUAAACAUCCUGCUGGAGCAUCCAUGGAGGUAUUCUGUACUGCUACUGGUCUAGUUGUCAGGUCAAUCGGGACUGGACCCAUUCUUUCCAGGAGGCCAUGUAUGAUGAGCAGUAGAACGCCCUUCGCUUUCCCUGCCAUUAUGGACGCUCAUCUUCUUUUGAG
Sequence
(OSA-LNCN3596.2):
AGGGCUACAUGAAUUUCCCACAAGCCUGUUACCUACAUUAGAUGAAAUGCUGUUCUCUUGUUCGUUGAGCAUUCUACAUCAUCUAAUGUCGGUUGAUUAAACAUCCUGCUGGAGCAUCCAUGGAGGUAUUCUGUACUGCUACUGGUCUAGGUCAAUCGGGACUGGACCCAUUCUUUCCAGGAGGCCAUGUAUGAUGAGCAGUAGAACGCCCUUCGCUUUCCCUGCCAUUAUGGACGCUCAUCUUCUUUUGAGGAUGGCUCAAUGGUUUUGGAAUUGUAUCGGUGGACCUGGACAACUUUCAGCGUUCGUCCUGGCCGUCACUGCGAGCGCGUGCGCCGCGAGAACGACUGCUGCUGAAUGAGCCACAGACAAUUGCUCGCUGUGCUGAAUGAGCCACAGACAAUAGGCCCUGGGACAGUUCAAUCUCAUCUGCCAAAUCUGUAUCCGAAUUCAGAUGCAAGGAUUGCGUACGUAUCUUCUCAGAAAGGCUUAGGAAGAGAAGAUCUGGCCUUGUUCUUUUCAGCUCAUUCCCCGGAUUAUUGAAACAGGAUAUACACGAGACUGAGGUAAAAGAGACGGAGACAAAGAUUUUUAUACAGAUGGAUAAUCUGAUUAGAUUUUUGGCGGCGACGUGGUUUCAAAGUAAUCAAUCGGGCCAAGGCCUCACGAUCGACAACAUUGAACUGUUGUUCUCCGCGGCGGUGACGUCUUGAAGCUUGAUCGAUCUCGUCGGAUCGAAUAGUUGAUGACGAUGGUUCCGAUCUCGUCGGAAGGCAAACUCCGGUCGGGUUAGACCUCCCCACAGCCGAAGUCGUCGAGUAGCUUGUUGUCGGAGAAUCCAUCUCUUAAACCCAUCUCGUCGAAAUCCUGAAGCACCAAAGUCCCCUACCUGGCGCGCCACUGUCGACGUUUGAUGUCGCGAUUCCGGUAUUUGCAUGGUAUGGGGAUCGUUGGUACUAGGAUAUACACGAGACUGAGGUAAAAGAGACGGAGACAGGGAUUUUUAUACAGGUUCGGGCCCCUGAAUUGUCAGGUAAUAACCCUACAUCCUGUUGGCCGAAGCCGGUAUUACUCUUAUUCACCAUAAUCGCACCAGUACAAUAUUUGGGGUUGCCUAUCUAACUGUUAUCGACAUAGCGGUCUGAAGGUCUGACUCAUAGUCGAGAACAGGGUAGUUUUCCUCCUCGAGUUCGUGUCCGGCAAGAUCAAAGAUAACGCUUUCGUCUCUACUGACAGUAUCUGGAGACACCGCAGGGGACUAGCCGUACCUAUCUCCGAAGUCAAUAUCCGGCGUCUUGUCUUGGCGUAUGUUGGCUUGUAUGUUGUGGCUUCUGUUGUUCCCUGUAUGUUGACUGUGGUAGGUGUUGAUUGUCUCGUGUCUCCUCUCUUCCUAGGGGGUCUUGUAUUUAUACCCAUAGGUGUCUCCUUGUCCAAGUAGAACUAGGGAAACCAAUAUGGAUACAAUCCGAGUAGUCCUUGUCGUUUCCAUGUAGAACUCUGGUUGUCUUUCCUUAUCCGGAACUACUCCUAUAUCCGCAUGUUAUUUCCGUAUAGGACAUGGUAUGUUGUGGGUCCUGCCGAGAUUUAGUCUACUACUAUUAGGUAUGUGGUAUCCAUAAUCCUGAUAAUUUAUUAAUUUUUUUAAAAAAUAAUUUACUCCUAUAGUAAGUAGAUAAUCAGUGAUAAUAAUCCGUCCAAUAAUCUAAAUCAAACUCACAAUGCAGCUGUGAUUGUUUUGGCAGCAUGCCAGCAUGGCUGGGCUAGGUGCUCUGCUGUGAACACAACACUGUCGGAGUGGACUCGACGGGUGCUAAUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
87.2%
ME_num:
MEP:
10.57%
HE_num:
HEP:
2.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.92
Avg Expression:
2.39
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.18989978808696 | 2.17307978936221e-30 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.34424438649895 | 7.64047012184735e-33 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.4402596116991 | 1.81548845698622e-32 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.47494683364475 | 2.48948054761726e-19 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -6.06936963330329 | 5.88524071917354e-18 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.46518185192054 | 6.28539630349032e-25 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.0510721270432 | 8.98371431215446e-06 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.44024649427414 | 1.84776741931972e-38 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.56558514748716 | 3.70437740612632e-11 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.713874002729 | 2.20618971127498e-29 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.97262482352163 | 8.66061929942303e-41 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.04517338190386 | 3.02874797077249e-28 |
| 13 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 5.23111672581691 | 0.0118911707544673 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -6.40321104551076 | 1.76726103337982e-34 |