Chr:
Chr3
Start:
8678194
End:
8678787
Strand:
-
Ref_name:
OSA-LNCN3586
Sequence
(OSA-LNCN3586.1):
GCGAGUUGGUGCGUUACGCUGGCUGGCGUGGUCCGGCAGCAUCGUUGGGAGUUGGGGACCGUUAAUUUGGAUUUGGGAGGCGUCAACACCGCUGGACAAAGGGGCUACUGGCCACGGCUUUGUAUAUGACCCCGGAAGGCACUGUCAGCUGGAUAUGAUAUAUCUGUAGCCAGAACAGGUCUGCCGUUUCCUCACCAAUGGAGUCCCCAUCAAGCCAUGAAAUAAUAGAAACAACAGACACCCAGCGAGAGCAAUCGAUUUGCUGGGCUUGAAAGAUACUUCUUGAGGGGGCUUUUUGCUAACCACCAGGUCAUAAUGUCCGUAAUCCGGCCGGAGAUUACCGAAGAUAGCAGGUGAUUAGAUGUAAAGUGCGGAUCCAAUGUUUGCUAUGCGUGUACGGC
Sequence
(OSA-LNCN3586.2):
GCGAGUUGGUGCGUUACGCUGGCUGGCGUGGUCCGGCAGCAUCGUUGGGAGUUGGGGACCGUUAAUUUGGAUUUGGGAGGCGUCAACACCGCUGGACAAAGCUGGAUAUGAUAUAUCUGUAGCCAGAACAGGUCUGCCGUUUCCUCACCAAUGGAGUCCCCAUCAAGCCAUGAAAUAAUAGAAACAACAGACACCCAGCGAGAGCAAUCGAUUUGCUGGGCUUGAAAGAUACUUCUUGAGGGGGCUUUUUGCUAACCACCAGGUCAUAAUGUCCGUAAUCCGGCCG
Sequence
(OSA-LNCN3586.3):
GCGAGUUGGUGCGUUACGCUGGCUGGCGUGGUCCGGCAGCAUCGUUGGGAGUUGGGGACCGUUAAUUUGGAUUUGGGAGGCGUCAACACCGCUGGACAAAGCUUCCUUUUUGCAAGGGGCUACUGGCCACGGCUUUGUAUAUGACCCCGGAAGGCACUGUCAGCUGGAUAUGAUAUAUCUGUAGCCAGAACAGGUCUGCCGUUUCCUCACCAAUGGAGUCCCCAUCAAGCCAUGAAAUAAUAGAAACAACAGACACCCAGCGAGAGCAAUCGAUUUGCUGGGCUUGAAAGAUACUUCUUGAGGGGGCUUUUUGCUAACCACC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
69.51%
ME_num:
MEP:
29.88%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.83
Avg Expression:
1.24
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.96511388874955 | 0.0119904044878197 |
| 2 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.07717102017757 | 0.0174139840183801 |
| 3 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -4.41511621565042 | 0.0122918381507632 |
| 4 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -3.56356438680203 | 0.028725884115842 |