RiceNCexp:Browse

OSA-LNCN3584

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr3

Start:

8637527

End:

8638192

Strand:

Ref_name:

OSA-LNCN3584

Sequence
(OSA-LNCN3584.1):

CGUACUCGUUGUAUUGCCGAUCGAUUGGACGAAUUUGCCAUCGGCUUAUUACUACAUGAGAAGCUAGCUGGAGAAUGGAGAUAGAUCAUGGCGAUGGCAUGGGAGAACGGGAGCUGCCUGCCUGCCUGACGAAGUUUCAGAGGUUGCAGCGCUAAUUGUCGCGAGAGAAAUGGGACUUCCACAAGCAUGCACGGGCUGCCGAACCUGCCUGAUGCUGUCGGAAAACUAAUAAUGGAGAUGCAGGGGAAAAGCAUAUAUAAAACCAUCUGAAAGAUUUGGCUGCCGCGCUCGUGAAAUCAGAAACUAGUACUAACAAGGAAAGCAUAGAAAAAGUUACUACCGUGUUUGCUUUCCAUUUCACGAAGAAUGUACCAGUAAUACCGUUUUAUUAUGAGCAUAUCCAUUAAUUAACUGCAGUAGAACAAGUAAUUAACAUUAACCUCCAUCUCAGUUGACCAAUCUAGCCCAUACAGUAAUGUAUUGUUCAACAAAUCUAGCCCAUAGUAAUGUAUUGUCCUGUACGUAUCACUGACAUGAUUGAUCAUCACCUGAUGAAAGCAUGCACAACCAUAUAAAAUUCAGUAAAAGCGACCCACAAAAGUGUUUCAUCAGUCGUCUCACCCAAGCAACGAAUUAGCAAAUCCGGGAGAGAAUUCACAUGAUCAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

460

LEP:

93.5%

ME_num:

MEP:

6.3%

HE_num:

HEP:

0.0%

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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

shoot

Tau :

0.98

Avg Expression:

1.05

Tip: OSA-LNCN3584 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256	4.4085106086563	0.0491487086461248
2	Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279	4.3535788115413	0.0353018503952054
3	Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12	4.4104308638417	0.0105326559261099
4	Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341	6.4325062331316	5.63885186196758e-05
5	Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331	6.01756190567812	0.000451291756876377
6	Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342	5.16770191422699	0.00215611902312913