Chr:
Chr3
Start:
7429732
End:
7430403
Strand:
+
Ref_name:
OSA-LNCN3558
Sequence
(OSA-LNCN3558.1):
UCCUUUUCGAAUUCAAAUUUAUGGAAAACCAUUCGAAAAUCCCCUCAGGAUCAAUUUUCGAACCGGUUCACGAAAUCUCGUGAUUUUUCUAACCAUUUUCAACUUUUCAUCGCUAUUGUAGAGUUUUUUUUUUUUGAGUAAAGUCCAGUGAUCACUGGUCCCUAAACUUGUACCGCUGUGUUAUCCCGGUCUCUAAACUCGCAAAUCGACCGUUCAGGUCCUCAAACUUGUUCGAUUGUGUCAUCCGGGUCCCUAAACUUGCAGAUCGGUCGUUUAGGUCCACCAACUUAUUCAGUUGUGUUACCCCGGUCCUUAACUUGGAUUUGAAUAUCAUCUAGAUCAAAUAGGACGGUCUAAAGACUUUAUAUUUAAAAAUAAUUCAUAACUUUUUCAUGUGAACUCUAAUGAAGACAAACUUUAUAUCAAACUUGUAGCCCUCGACGCGAUCUACAACUUUGUAGUUGAAUUUUUUUUAUUUUAAGUCAUUUUUUGUCCCAAAAUGUAAUAUUAAAAUUAAAAUUUCAAAAUCUAUAAACAUGCAACAAUAUUUUGGGACCCUAAACAGUUUUAAUUCAAAAACUUUUCAACUACAAAGUUGUAGGUCACGUCGAGGGCUACAAUUUUGAUAUAAAGUUUAUCUUCACUAGAGUUCACAUGAAAAAGUUUUGAAUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
87.2%
ME_num:
MEP:
12.4%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.89
Avg Expression:
1.99
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 4.9207537329304 | 0.000294618769399571 |
2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 4.63436698829805 | 0.00289674651422369 |
3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 6.27426716440458 | 0.00988063162204661 |