Chr:
Chr3
Start:
6907421
End:
6908253
Strand:
-
Ref_name:
OSA-LNCN3550
Sequence
(OSA-LNCN3550.1):
GGACCAAGCUCUAUAGCUACGGUGGCAUGGCUCCGCUGUCCAAGCUGCCGAGGUGGUGGGGGGCUCGUCACAGGCUCACAGCCGAGCGCCUGAAGGAUUGCCCGCCAUUGUCUCGCUGCUACCCUACUGCCGAGAGAAAAUACUACAUUUGAGAGGAGAGACUAUUUAAUGAUCAGGCAAUCAGCACUCAGCGGAGAAUCAGCACUACAUUGCAGUUUCCAGGGAGAAACAAGCACUGUAAUUAUGGAGACAGAAGCCACAGUUGACAGCACCACAUUGCAGUUUCCAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
67.68%
ME_num:
MEP:
30.08%
HE_num:
HEP:
2.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.83
Avg Expression:
2.47
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.77702447057389 | 0.0344094987408694 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.61237695827624 | 0.000415412636373524 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.02771447419602 | 0.0172741279783162 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.51373646940873 | 0.0187413533718442 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.04636775165795 | 0.00642062323185262 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.7959498697532 | 0.00263166372423966 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.57838287629935 | 7.94973522424348e-05 |
| 8 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -5.07396509439366 | 0.0131137629927214 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.16298511053948 | 0.0153198397904791 |
| 10 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.19100661225673 | 0.000481991288043447 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.85319667188731 | 0.000213589674420018 |