Chr:
Chr3
Start:
6880121
End:
6883578
Strand:
+
Ref_name:
OSA-LNCN3547
Sequence
(OSA-LNCN3547.1):
CCCCUUCUUGCAUAUAAAUGGCAUAUGGGUCUAUACACUAAGUCUACAAACAACGUACCCAUGUACAGUGUUCCACACUGAUCAGCAUUGCCUCCGGAAAGGCCUCUUCUUCUAGUCGUCUCCCUCCCUGCUCCUCCUUCCAUUGCCUCCGGCCUCUCCAAUGGCGAACCCGGCGGCCGCACCCACGAAUGACUAGCCCUGUCAUUGCCUAGUCUCGGCCAAUGUAGGUGUAAGAGGGUGCGGCCGCCGCCGCCGCCGCCACCAAAGGCAGACAGGAUGGAGCCAGGCGUUACUUGUAGUUGUACUACUGUCUACUACCAACGAUGAGAGGAUGCGAAGGGAGAUCGAGAAGAAGGCUACGUGCGUGUGUGCGUUCGUACCGUAUAUACAAGGCGUAUAGGUACGGCCGGAGGCGGCGGAGUAUUGUACGGAUCUAAAAGAUAAUCAAGAAUGUGCUUGGGCAAGUGGUACUAGUAGUCUGCUCAAUUCUACCAGUACAUUUUCAGCUCAACGAGACACGAGGCUGUCACACCAUCGAAUUUUCAGUGAUUGUGGGUGCACAUACUUGUGUCGCGCUCGCAAUCAUCACUGUGCUCGGAGUCGCACACUUUCAGCAUUUUCAGGGAAUCACACACUUACCAGCAUUUCAGGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
37.8%
ME_num:
MEP:
48.78%
HE_num:
HEP:
13.21%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.89
Avg Expression:
13.50
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 4.82088364958235 | 0.00320678196538235 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 4.31309599116079 | 0.0143747106021169 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 7.87025133362526 | 3.32656856105773e-10 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 9.89626230757132 | 6.08321796833272e-15 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 9.04868562581256 | 2.25262050676275e-13 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 9.53633130121626 | 6.35182400680784e-15 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 5.33400166740484 | 0.000516451947195141 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.77724802761547 | 0.0241664844137529 |
| 9 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.81906266810262 | 2.39571879469491e-06 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 10.2365849071656 | 2.14560413850305e-17 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 6.88797784850679 | 1.00637070169212e-07 |
| 12 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.12720970279357 | 0.00292473986995996 |
| 13 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 1.68303823024882 | 0.000383395053728668 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 6.21832587728247 | 6.44282678905628e-06 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 7.88300441531104 | 1.93507418673149e-10 |