Chr:
Chr3
Start:
6327086
End:
6354014
Strand:
+
Ref_name:
OSA-LNCN3538
Sequence
(OSA-LNCN3538.1):
GUGCCGUCCCGACCCACGUGCCGAGCCGCCGGCCCAAGCACGGCCCGUGGAUGGCCGGGCCGUGCCCGUGCCGGCACGGCAUGCGUGUGGCCCGCCGUGUCAGUACGGGCCCGUGAAUGAAAAAUGGGCCGUGGACGGGGCACGGUUGGCCCAGGAACCGAAAUGGCGCGGAAGGAUGCGAUGCGGACUUGCGGAGGUGGCUGGCGGGCUGGGCCAUCAGCUAGGAGGGGUGCUCAACGGACUUGCGGAGGCGGCUAGCGGGCUGGGCCGUCAGUUGGGAGGGAUGAGAUACGGACUUGCGGAAGGAUGAGAUGCGGACUUACUACAGUAGCCGUGCCGUGCCGUGCCGGCCCGCGGGCUCGGCCGGCGGCCCAAGCACGGCACGGCUACUCGUGCCGUGCCGGCACGGCCCGUUACUGUAGCAGGCCGUGCCGGGCCGUGCCGGCUACAGGUUCCGCCGUGCCUCAGGCCGCCCGUUUUGGCCCGGCCCGUUUGGCCACCUCUACCAACACCUCAGAUAAUCCCCCACGUCCCCCCUCCUCCCCUCCCGCACCCAUCUCCUCACGCCCCGCAUCCACCCUCAUCCCUCCUCUCUCUCCCGCAUCUUCUCCUCGCACUCUCUCGCCCCCUCGCCGCCAUGCGGCGGAUUUUUCAUAGAAUCGAGGCGCUCCUCCUCCGCAGUCCGCACCACCAUCGCGCCGCGCGCCUCCCCUCCAUCGUCGCACCUCCCCAACAUCGCCGCGCCGGCGCCCACCAUCGUCACUGCCGCCCAUCGCUCUCCACUGCGCCCCCUCGCCGCCGUGCGCCCUCCCAACCCUAACCCCUGCCGCUCAGGAUCCCCCCUCCCCCGCCUCUCCUCCUCCUCCCCACCGCCGACGACUAGCGCCGACGUUGUCCCCCCCCCCCCCCGCCUUUCCUCCUUCCGCCCACCUGCCACCGACGCCGCCACCCCAGGCAGUGACUCCUCCUCGCCGACGCCGACACUGAAUCCCCCGCCGACAACGCCACCGCCGUUGACGCCUACUCCUGUGGCAGUGUGAGUGUGGAGGACUGCUGCUUCCUUGUCUUCAUCAGACAGAGGAAUACCGGACAGUUGUUGUUUUUCUUUCUUUUCUUCUGUUGGGGUGGGUUCAUUUAAGAAAUACCCAGUUUGUUAGGUUGAUCACAUGUCCCCAUUUUGAUCUGCGAC
Sequence
(OSA-LNCN3538.2):
GUGCCGUCCCGACCCACGUGCCGAGCCGCCGGCCCAAGCACGGCCCGUGGAUGGCCGGGCCGUGCCCGUGCCGGCACGGCAUGCGUGUGGCCCGCCGUGUCAGUACGGGCCCGUGAAUGAAAAAUGGGCCGUGGACGGGGCACGGUUGGCCCAGGAACCGAAAUGGCGCGGAAGGAUGCGAUGCGGCUAGCGGGCUGGGCCGUCAGUUGGGAGGGAUGAGAUACGGACUUGCGGAAGGAUGAGAUGCGGACUUACUACAGUAGCCGUGCCGUGCCGUGCCGGCCCGCGGGCUCGGCCGGCGGCCCAAGCACGGCACGGCUACUCGUGCCGUGCCGGCACGGCCCGUUACUGUAGCAGGCCGUGCCGGGCCGUGCCGGCUACAGGUUCCGCCGUGCCUCAGGCCGCCCGUUUUGGCCCGGCCCGUUUGGCCACCUCUACCAACACCUCAGAUAAUCCCCCACGUCCCCCCUCCUCCCCUCCCGCACCCAUCUCCUCACGCCCCGCAUCCACCCUCAUCCCUCCUCUCUCUCCCGCAUCUUCUCCUCGCACUCUCUCGCCCCCUCGCCGCCAUGCGGCGGAUUUUUCAUAGAAUCGAGGCGCUCCUCCUCCGCAGUCCGCACCACCAUCGCGCCGCGCGCCUCCCCUCCAUCGUCGCACCUCCCCAACAUCGCCGCGCCGGCGCCCACCAUCGUCACUGCCGCCCAUCGCUCUCCACUGCGCCCCCUCGCCGCCGUGCGCCCUCCCAACCCUAACCCCUGCCGCUCAGGAUCCCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
6.3%
HE_num:
HEP:
93.5%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.51
Avg Expression:
24.43
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.42369519126209 | 9.15767162526672e-09 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.14586775714247 | 1.73449740276935e-11 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.23495740675305 | 3.77538774598004e-15 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.05993306444301 | 5.79847738288348e-14 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.1458690470282 | 1.48787946372189e-18 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.07002043560458 | 5.66701482220001e-14 |
| 7 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -1.17387765816872 | 0.0489931424796008 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.43592274792591 | 4.81941395878955e-24 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.18830248068985 | 3.80400619097246e-15 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.4830357854865 | 3.03059235244053e-31 |