Chr:
Chr3
Start:
6297644
End:
6298442
Strand:
-
Ref_name:
OSA-LNCN3535
Sequence
(OSA-LNCN3535.1):
GGCAACUUGAAGUAUAAGUGCAAGAUCACAAGAGGGUGAGGGUGUGUGUUGGGGGGUAUGCAUACUGACAUUUGACAUACAUCACAUUUAAAAGAGAGAAAAUUCCUUCCAUACCCCUGAAAUUUUAGCCGAUCCCUUCUAUGCCCAUGAAUUUCCUUCACUCCCUUGUAUACCUCUGAAUUUUGAUUUGGAUCUCUUCCAUACCCUUGCCGUUAAUUGACCGUUUAAUAGGUAUAUAAAAGUCAGUUUUACCCUUCAAUAUGUGAGGAAUAUGUAGAAAUUUGUAAACUAUAUUGUUGGAAGUAUAAAAUUUGUUGUGUGAUUAUCAUAUUCAUAAGUUUUAUGUACAUAAAAAAUUUAAUAUAUAUUUAAAAAGUACAUGUAAAUAAAUAUUAGUUUUUAUGUCAUUAGGUAAAAAUAAACUUUGCCAUGAAUAAUACCUUGUACAAUAAAGUCAUGAAUAUGAUAGUCUUAUAUAACAAAAUUAUACACUUCCAACAAUAUAGCUAGUCUACAAUUUUUAGAUUUCCUUCAUGUCUAAGGGCAAAAAGGUCCUUUUCAUUAGAAUUAAACAUUCAACUAACGGUAUGGGUAUGAAAGGGAUCAAAACCAAAAUUCAGGGGCAUACAAAGGAGUGGACAAAACUCGGAGGCGUAGAAGGGAUUGGCUAAACUUUCAGGGGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
23.17%
ME_num:
MEP:
39.23%
HE_num:
HEP:
37.4%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.68
Avg Expression:
9.65
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -3.06068161633768 | 0.034206926311441 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.68485189187423 | 1.09871452732513e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.79758810990355 | 6.48561450737309e-07 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.91560216528888 | 1.48234451043343e-07 |
| 5 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -1.55929208171562 | 0.000920732309731684 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.42187926895097 | 0.00566194223943108 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.00077074021718 | 0.00675973431630144 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -2.05931102309285 | 0.00147850487320018 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.59377706934243 | 0.00061468324628859 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.34180654084426 | 0.00924567913602288 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.61857878933544 | 0.0102525862743118 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.1895452670994 | 0.0187399943250912 |
| 13 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -3.72516326308364 | 8.52349695405216e-07 |
| 14 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.16368281837648 | 0.0204349107247141 |