Chr:
Chr3
Start:
5665245
End:
5666271
Strand:
-
Ref_name:
OSA-LNCN3521
Sequence
(OSA-LNCN3521.1):
GUGGCUUUGCUACCACUGGUGGAGAAACCAUUUUUGGUCGGCCGACCAAAAUCCACAAUAGUCCCGAUUCCACUAAAAAUCAUCUUUAAUCCUGGUUGGUGGCUACAGUGGGCAUAUUUGAUCUUUAGUCCCGGUUGGUGAUCCUAACUUUAGUCCCGGUUGGUGUAACCGGGACUAAAAAUUCUAACAACCGGUAAAACAAAGCCUCUAUCCACGCGCGCGCAUGAAAGUCUCCUAUUAAUUCCAUCCUUAUCCCCUCCUCUCCCAUCCAGCCAUCCUCUCCAUCUUAUCUUCUUCUCUCCUCCUUUCCUCCCAUCCUUCUCUUCCUUCUUCUCUCACCCCAUCUCCUCCUCCCCUCUCCUCCCCUCCAGCGGGGCGGCGGGAUGGAGGCCGGCCACGGCGGCCCCGGACAGGGCGACGGGAUGGAGGCCUCCGCGGCGGCCCGACGCGAGGCGACGAGAUGGAGGCGGCGGCGGGCUGCAUCGAGGGCGGCGGCGACCGGCGCCGGUCGAGAGGGGCGGUGGCCGGCUGCAUCGGGCGCGGGGCGGCGAGAUGGGGGCGACUGGCGCCGGUCGAGGUGGCGGUGGCCGGCGCCGGUCGAGAGGGCGGCAGCCGGCUGCGUCGGGGACAGCCGGCGCCGGUCGGGAGGGCGGCGGCGGCAGGCGGAGAACUUUUUUUUUCUUUUCUCUAUGCUAUCUGAUGAAUGCUGGAGAUGUUGUAGAUGUGAACUUUCUUUUUUCUUUCUCUAUUCUCUGUGAUGAAUGCUCUCUUUGUUCUCUGUGAUGAAUGCUCAUUGUUCUGAAGAUGUUGUAGAUCUGAACAAGUGUAAAGAAUAUGGAUGUUUUGUUGUUUGAUUUUAUUCAUUCGAUCUAUGAUUUAGGCUCUGUUGUUGAUUUUAUUCAUUUGAUCCACGAGCGAAAGCUAAAGAACAAUACAAAAGGAAAAAGGCCAACCGGAUGAAAGGAAAAGAAAACAAACAAAACUUUUUUAGUCCCGGUUGGUAACAACAACCGGGACCAUAUUUUUA
Sequence
(OSA-LNCN3521.2):
GUGGCUUUGCUACCACUGGUGGAGAAACCAUUUUUGGUCGGCCGACCAAAAUCCACAAUAGUCCCGAUUCCACUAAAAAUCAUCUUUAAUCCUGGUUGGUGGCUACAGUGGGCAUAUUUGAUCUUUAGUCCCGGUUGGUGAUCCUAACUUUAGUCCCGGUUGGUGUAACCGGGACUAAAAAUUCUAACAACCGGUAAAACAAAGCCUCUAUCCACGCGCGCGCAUGAAAGUCUCCUAUUAAUUCCAUCCUUAUCCCCUCCUCUCCCAUCCAGCCAUCCUCUCCAUCUUAUCUUCUUCUCUCCUCCUUUCCUCCCAUCCUUCUCUUCCUUCUUCUCUCACCCCAUCUCCUCCUCCCCUCUCCUCCCCUCCAGCGGGGCGGCGGGAUGGAGGCCGGCCACGGCGGCCCCGGACAGGGCGACGGGAUGGAGGCCUCCGCGGCGGCCCGACGCGAGGCGACGAGAUGGAGGCGGCGGCGGGCUGCAUCGAGGGCGGCGGCGACCGGCGCCGAACUUUUUUUUUCUUUUCUCUAUGCUAUCUGAUGAAUGCUGGAGAUGUUGUAGAUGUGAACUUUCUUUUUUCUUUCUCUAUUCUCUGUGAUGAAUGCUCUCUUUGUUCUCUGUGAUGAAUGCUCAUUGUUCUGAAGAUGUUGUAGAUCUGAACAAGUGUAAAGAAUAUGGAUGUUUUGUUGUUUGAUUUUAUUCAUUCGAUCUAUGAUUUAGGCUCUGUUGUUGAUUUUAUUCAUUUGAUCCACGAGCGAAAGCUAAAGAACAA
Sequence
(OSA-LNCN3521.3):
GUGGCUUUGCUACCACUGGUGGAGAAACCAUUUUUGGUCGGCCGACCAAAAUCCACAAUAGUCCCGAUUCCACUAAAAAUCAUCUUUAAUCCUGGUUGGUGGCUACAGUGGGCAUAUUUGAUCUUUAGUCCCGGUUGGUGAUCCUAACUUUAGUCCCGGUUGGUGUAACCGGGACUAAAAAUUCUAACAACCGGUAAAACAAAGCCUCUAUCCACGCGCGCGCAUGAAAGUCUCCUAUUAAUUCCAUCCUUAUCCCCUCCUCUCCCAUCCAGCCAUCCUCUCCAUCUUAUCUUCUUCUCUCCUCCUUUCCUCCCAUCCUUCUCUUCCUUCUUCUCUCACCCCAUCUCCUCCUCCCCUCUCCUCCCCUCCAGCGGGGCGGCGGGAUGGAGGCCGGCCACGGCGGCCCCGGACAGGGCGACGGGAUGGAGGCCUCCGCGGCGGCCCGACGCGAGGCGACGAGAUGGAGGCGGCGGCGGGCUGCAUCGAGGGCGGCGGCGACCGGCGCCGGUCGAGAGGGGCGGUGGCCGGCUGCAUCGGGCGCGGGGCGGCGAGAUGGGGGCGACUGGCGCCGGUCGAGAGGGCGGCAGCCGGCUGCGUCGGGGACAGCCGGCGCCGGUCGGGAGGGCGGCGGCGGCAGGCGGAGAACUUUUUUUUUCUUUUCUCUAUGCUAUCUGAUGAAUGCUGGAGAUGUUGUAGAUGUGAACUUUCUUUUUUCUUUCUCUAUUCUCUGUGAUGAAUGCUCUCUUUGUUCUCUGUGAUGAAUGCUCAUUGUUCUGAAGAUGUUGUAGAUCUGAACAAGUGUAAAGAAUAUGGAUGUUUUGUUGUUUGAUUUUAUUCAUUCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
14.63%
ME_num:
MEP:
15.85%
HE_num:
HEP:
69.31%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.79
Avg Expression:
63.88
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.30405718491559 | 2.07975588304178e-08 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.59437360196198 | 4.96678069641907e-16 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.48308018281617 | 4.36304233161262e-11 |
| 4 | Azucena // root // control--/--Azucena // root // Al | -1.34199749399124 | 0.0383054766641633 |
| 5 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.29296473020979 | 0.00182466975497086 |
| 6 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.80516099684535 | 3.774623730566e-06 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.1026499894237 | 1.07387921967573e-05 |
| 8 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 1.88581441024549 | 0.0356074958409377 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.20547024645375 | 1.22037372511247e-08 |
| 10 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 1.60837096037331 | 7.86043343737744e-05 |
| 11 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 1.60828743234701 | 8.09401536192975e-05 |
| 12 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 1.60822477328571 | 7.92781029551742e-05 |
| 13 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 3.11044231332215 | 0 |