RiceNCexp:Browse

OSA-LNCN3513

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr3

Start:

5310868

End:

5312254

Strand:

Ref_name:

OSA-LNCN3513

Sequence
(OSA-LNCN3513.1):

CAGAUCCGUUCUGUCAGGCAUCUUGGCUUACGGGUGAACUACACAGCGAUGGCAUCAAUUUGCAGUUGACGUGAACAAUCGGAUAAAUAUGGAUUGGCUAUUUACUAUUGGGCAAGAAGUGUUUGGUGCUUUGCAUCCAACAGCCAUAUGAGGCUCAGUCUCUUGGUAUGAAUUCAUCAGAUAACUCUUCUCUUCGUAAUAUUCAUCUUUCAAAAUAUCAUUUCAGGAUCACGUCAAUUUUUUCACCAUUGAUCUUGGCAUAGUAUGAACUGGACAGACUUUGGUCCAUUCCCCUGGAUGUAUGCAAUAUUUAUUCCAUUUCAGGAGGCUAGCAUUAUCCAAUCUGCUGCUUUGACUGCAUGGCGUGCUUUAUACGACAACUGCAGGUGAACGCGAUUCGACUUGUACCCCUGAUUUUGUCUGGCAUCUUGUUCCACCAGAUCGGCUGCAAUGCCUCCCGUCAAGGAGUUGAGGAAGAGCCACAGCAACACCCCCUAAGCCGGUUGCCCUGAUUGUGUCCCGUCCCUGCAAAGUGCUGGGUACCCAUUUUGCUGCUUCUUUUAGAAGAAAAUCGUUGUUUGGUUUAUAGUGUGUCCCCUUUGUUCCCCUUUAUUUCUUAUUGAUGAAUGGAACUCAUUGGAUUUAGUUUGGAUGCAACUGCUUGUCGAUAAUGAGGUAGCAAACUCUCCUGCAUCAAUACAUUGGCUCUCUAUGUGGACCUAAUGAGGUAGCAAACUCUCCUGCAUCAAUACAUUGGCUCUCUAUGUGGACCGUGCAUUUGUUUUACUUAGUACUUACGAGAUAUAUGUUGUUUUCUUUUUUAAGUUGAUCUUCCCAUUCUAUUACAGUAAAGUCCAAGUUCUUAAUUUCAAAUGAGAUGUGACCUUCUGCUCUGUUUUAUGGUUGCAUGUAUUUCAACUUUGUACCAAUGCAUGCUACUAAAUUUUUAUGCUUUUUCUAGCAGAAUAAAAUCCUAUAAACUGGUAAAUAAUUUAUGGGCUUCUUCUGCAUUAUAAUGGAAUGCCUAGG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

442

LEP:

89.84%

ME_num:

MEP:

9.96%

HE_num:

HEP:

0.0%

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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

carpel

Tau :

0.96

Avg Expression:

1.76

Tip: OSA-LNCN3513 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN	-3.43951453172449	0.034614396036582
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	-3.10436332395494	0.0230351220045334
3	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA	-4.95093683467225	0.00590413115981984
4	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA	-2.5203870125462	0.0326792683195161
5	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	-3.50694554039091	0.0152630032847546
6	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA	-3.1313142387352	0.00668163229127444