Chr:
Chr3
Start:
5361224
End:
5366215
Strand:
-
Ref_name:
OSA-LNCN3512
Sequence
(OSA-LNCN3512.1):
CGACUAAGAUUCUCGCUUGCCCUUGCGUGUGGUGUGUCCUUUGCUUUGCACCAUCAUCAGCUCGUGCGUCUGUCAAUCCACUCGCUUGACACGCUAUCAUCUGUCGUUGCGCAAUCUGGAUCGAUCCCGCCCUCGUGAAGUAAUCCAGGAUUCCAAAUCGAUUCUGGUGUACCCGCAGCUUGGUGGUGGUUUCGGUUGUGCGGCACCGCUCGACUGUCGUCCUCCUAUUGGAAUCGAUAGCGUUGCCGCCUGAUCCAUCGCUCUGUCGUCGCCCGGAUGGCCAAUUUUUCAUUGGCAUUCAUCCUGCGUGGGUGUUGUGGCCUCCAUCCUUCUCAUCGGACACAAGUCGUGAAGCCGAGAUCGGAACCGAAGCUAAGGUUGAAGAGGCCGGCGGCCGACAGGUAUGUCAGAUGCAGGACAUUUGCAGGCCGGAUGAUACGCCAUGGGAAAGAGGUCAGGCUCCUUGGUCGGUUUGGUUUUGCUCGGAUUCGUAGCCGCCUUCAUCGCCAUGGCCUUCCUCCGGCUCGAGUUCUCGCAGUUCUUCAAGGUGUUCGCUAUUCUCGCCUCCACGCCAGCGCAGUUGUUGCCUUCGGUUGCGCAUUGCUCGAGUGUAGAGAAUUGAACCCUCGAUGCAGCUGACCGGGAAAGGCGCAAUUCGCGUCGCCAGCGGUGACUUUCUCUAAGACUAUUGAGUAAAUUGUUCCUGACAGCAGUUGCUUGAACGCUUCAAAGACUUCAGUCUCCCACAUGAAGUUCUCUUAUUGUUUGAGGUCAUCAAGUUCUGGGAACAAAGAAGAAUCGCAAAAUACUAUAAGCAGAAACCAUGAAUGAGCUUUGGUUGCUUAGAUCAGAAUGCUCCCUCUGAGGUUGGAUUGAAGGGUUGAAGAGAACAACGAAGAGCUGCUGGAAACUUGACUGACGACUACCCGUAAAGAGAAUGGUGAAGAGUUACUGGAAGGGGGUGCUGUGAUGCAUAUGCUGGCAAAAAAACAUUCAUACUCCUACUUUAAGUUGGCAUGUAGGCAUGCUUAAAAAAACGCCAGGAACUGUACAAGCUGUAAAUGAACGGAACGAAGAGCAAUAGAUCAUCCGUUAGGUCAUGUUUGGUUUUGAACAAGCCCUAUAAAAUAGGCGAAGAAAUUCUAUUCUUCUAUUUACCAUUUAUUGGCUACUGUUGAUGCUUUUAUCAUUUCUAAGAAACUGAUGGAGGAUCCAAGGUCACAAUAAUCUUAUUAAACUUCCAUUUUCAUCGGUACCUGUGAGCUUUAAUAAUGUAUCCAUAGCAUUAGGAUUGGAUACUACUCCCUCCGUCAAAAAAAA
Sequence
(OSA-LNCN3512.2):
UUGCUUGAACGCUUCAAAGACUUCAGUCUCCCACAUGAAGUUCUCUUAUUGUUUGAGGUCAUCAAGUUCUGGGAACAAAGAAGAAUCGCAAAAUACUAUAAGCAGAAACCAUGAAUGAGCUUUGGUUGCUUAGAUCAGAAUGCUCCCUCUGAGUAUUUCAUGAAGGUUGGAUUGAAGGGUUGAAGAGAACAACGAAGAGCUGCUGGAAACUUGACUGACGACUACCCGUAAAGAGAAUGGUGAAGAGUUACUGGAAGGGGGUGCUGUGAUGCAUAUGCUGGCAAAAAAACAUUCAUACUCCUACUUUAAGUAAUUAUCGGACUUCUUGUUGAUUUUUGGAGAAACAAAAGAGAUAUACGCAGGUUGGCAUGUAGGCAUGCUUAAAAAAACGCCAGGAACUGUACAAGCUGUAAAUGAACGGAACGAAGAGCAAUAGAUCAUCCGUUAGGUCAUGUUUGGUUUUGAACAAGCCCUAUAAAAUAGGCG
Sequence
(OSA-LNCN3512.3):
CGACUAAGAUUCUCGCUUGCCCUUGCGUGUGGUGUGUCCUUUGCUUUGCACCAUCAUCAGCUCGUGCGUCUGUCAAUCCACUCGCUUGACACGCUAUCAUCUGUCGUUGCGCAAUCUGGAUCGAUCCCGCCCUCGUGAAGUAAUCCAGGAUUCCAAAUCGAUUCUGGUGUACCCGCAGCUUGGUGGUGGUUUCGGUUGUGCGGCACCGCUCGACUGUCGUCCUCCUAUUGGAAUCGAUAGCGUUGCCGCCUGAUCCAUCGCUCUGUCGUCGCCCGGAUGGCCAAUUUUUCAUUGGCAUUCAUCCUGCGUGGGUGUUGUGGCCUCCAUCCUUCUCAUCGGACACAAGUCGUGAAGCCGAGAUCGGAACCGAAGCUAAGGUUGAAGAGGCCGGCGGCCGACAGGUAUGUCAGAUGCAGGACAUUUGCAGGCCGGAUGAUACGCCAUGGGAAAGAGGUCAGGCUCCUUGGUCGGUUUGGUUUUGCUCGGAUUCGUAGCCGCCUUCAUCGCCAUGGCCUUCCUCCGGCUCGAGUUCUCGCAGUUCUUCAAGGUGUUCGCUAUUCUCGCCUCCACGCCAGCGCAGUUGUUGCCUUCGGUUGCGCAUUGCUCGAGUGUAGAGAAUUGAACCCUCGAUGCAGCUGACCGGGAAAGGCGCAAUUCGCGUCGCCAGCGGUGACUUUCUCUAAGACUAUUGAGUAAAUUGUUCCUGACAGCAGUUGCUUGAACGCUUCAAAGACUUCAGUCUCCCACAUGAAGUUCUCUUAUUGUUUGAGGUCAUCAAGUUCUGGGAACAAAGAAGAAUCGCAAAAUACUAUAAGCAGAAACCAUGAAUGAGCUUUGGUUGCUUAGAUCAGAAUGCUCCCUCUGAGGUUGGAUUGAAGGGUUGAAGAGAACAACGAAGAGCUGCUGGAAACUUGACUGACGACUACCCGUAAAGAGAAUGGUGAAGAGUUACUGGAAGGGGGUGCUGUGAUGCAUAUGCUGGCAAAAAAACAUUCAUACUCCUACUUUAAGUAAUUAUCGGACUUCUUGUUGAUUUUUGGAGAAACAAAAGAGAUAUACGCAGGUUGGCAUGUAGGCAUGCUUAAAAAAACGCCAGGAACUGUA
Sequence
(OSA-LNCN3512.4):
CGACUAAGAUUCUCGCUUGCCCUUGCGUGUGGUGUGUCCUUUGCUUUGCACCAUCAUCAGCUCGUGCGUCUGUCAAUCCACUCGCUUGACACGCUAUCAUCUGUCGUUGCGCAAUCUGGAUCGAUCCCGCCCUCGUGAAGUAAUCCAGGAUUCCAAAUCGAUUCUGGUGUACCCGCAGCUUGGUGGUGGUUUCGGUUGUGCGGCACCGCUCGACUGUCGUCCUCCUAUUGGAAUCGAUAGCGUUGCCGCCUGAUCCAUCGCUCUGUCGUCGCCCGGAUGGCCAAUUUUUCAUUGGCAUUCAUCCUGCGUGGGUGUUGUGGCCUCCAUCCUUCUCAUCGGACACAAGUCGUGAAGCCGAGAUCGGAACCGAAGCUAAGGUUGAAGAGGCCGGCGGCCGACAGGUAUGUCAGAUGCAGGACAUUUGCAGGCCGGAUGAUACGCCAUGGGAAAGAGGUCAGGCUCCUUGGUCGGUUUGGUUUUGCUCGGAUUCGUAGCCGCCUUCAUCGCCAUGGCCUUCCUCCGGCUCGAGUUCUCGCAGUUCUUCAAGGUGUUCGCUAUUCUCGCCUCCACGCCAGCGCAGUUGUUGCCUUCGGUUGCGCAUUGCUCGAGUGUAGAGAAUUGAACCCUCGAUGCAGCUGACCGGGAAAGGCGCAAUUCGCGUCGCCAGCGGUGACUUUCUCUAAGACUAUUGAGUUGCUUGAACGCUUCAAAGACUUCAGUCUCCCACAUGAAGUUCUCUUAUUGUUUGAGGUCAUCAAGUUCUGGGAACAAAGAAGAAUCGCAAAAUACUAUAAGCAGAAACCAUGAAUGAGCUUUGGUUGCUUAGAUCAGAAUGCUCCCUCUGAGGUUGGAUUGAAGGGUUGAAGAGAACAACGAAGAGCUGCUGGAAACUUGACUGACGACUACCCGUAAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
87.2%
ME_num:
MEP:
12.6%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.91
Avg Expression:
1.29
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.43969010350916 | 0.0444292696776432 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.05611792590155 | 0.00668174686474031 |