Chr:
Chr3
Start:
5142929
End:
5143888
Strand:
.
Ref_name:
OSA-LNCN3503
Sequence
(OSA-LNCN3503.1):
GCAGGUUACUCAUCGUGUAAGCUGAUAUAUCCAGGUUCACAUGCAUCUGUGGAUGUAACAGUGGCAAUCAACCUCAACUCCACGAGUGAUCAGUACGUAUAUGUCCACGACGUGGAAGGGCAUGCGCAGUGCAUUGUAUUCCGUACACCGUAUAAUUCGUGCAUGCUUGUAGCAUUAAAUGGAUUAGACGGCGCAACAAUACAACUAUAUCGCAAAAACGGAGGCGAUCGAACGAAGUGAGCCGUUACGUUUCAUUUCAGAGACGACGCAUCUAUACGUACGUGGGGGAUGCACUGAAAGCUGCCAGAACGGCAGCCGGCCAGCACGCCGUUCUUUUUGGGGAAAGCAAGCAUUGCCAUGACGCAUAUAGGUCGGCAGGCACCGAUCUCUGCAGGGAGUUUCGGAGGUGACGUCAUUCGAUCUUUAUGAUGAGGACUAGCUAGCCAUGCAAUCGAAUUUUGUGCAUGAACUCAUCGGGGUCGUUAUUGGCUUCUUGCUAAUGGGAUAACUUUGUGUUGGAAGAACAACCCUACCGAUAAGAGUUGAUACUUCAAUCAAACUGAGACUUCAAUCUAAGACCACCCAAGCGCAAUAGGAUGUGAAUUACCGAGUCGAUUCAUCAUCAGACUGAAGAUCUGAAAGGUCGCGUGUUCGAUCCACGCUCACCGCAUUAAUGUUUUGAGCGAAAUCUAGCCCAUGUUCUCAUGUUUAGCACUCUUUCUUCUUGGGCCCCAGAAAUUUUUUAAGAUCGCGGGUGGCCCAUGUUUAGCAGUCUUUCUUCUCUGGCCCAUGUUCCCAUUCUUCUUCGGCCGAAUUAUUUUAAGAUCGCGAAUUCUGGCCCAUGUUCCCAUGUUUAGCAGUCUUUCUUCUGGGCUUCUGGCCCAUAGUCCCAAAAUAGUAUUGUAGGCUGUUUUGGCUAAUGUGACACUGCAAGCAGAAACAUAUAACAAGCGAUUUUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
90.04%
ME_num:
MEP:
9.15%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.94
Avg Expression:
2.65
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 4.61700300550496 | 0.0417132477769458 |
| 2 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 4.61694978318686 | 0.0418710943229864 |
| 3 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 4.61681951215009 | 0.0418051769226719 |