Chr:
Chr3
Start:
4912386
End:
4912911
Strand:
-
Ref_name:
OSA-LNCN3502
Sequence
(OSA-LNCN3502.1):
GACGCGUGCCUGCACGGCCGUACACGCCGUAGCAUGCCGCCCGUCGAACUGCGGGGAUUGGGGAUGCAAUCCAGAGCUCAUCCUGACGUGAAACGAGUUUUCUCGCCUCGGUCUGAAGCUGAGUGGCGGAGGUCGCCUUGUUUGCCGGACAAGUACAUUGAAAGCGUCGUCCAAGCUUGAUCAGCGGCAAAUGGCUUAUGGUUGGAGUCUUGAAGAUGGAAGAGUUGGCCAAGUUACUAAGAUAGAGGAGGUGACACCUGAAACCUGGUUGGAGUGAACUUUGUUUGGCUACUAAGGUGCAAGCAGGAUAUACUAUACCAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
84.96%
ME_num:
MEP:
14.02%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.91
Avg Expression:
1.74
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 4.02156141674829 | 0.0405945869516004 |
2 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 4.93603228482193 | 0.0369434074649712 |
3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 5.78109401208383 | 0.0398121571331519 |