Chr:
Chr3
Start:
4341791
End:
4342473
Strand:
+
Ref_name:
OSA-LNCN3493
Sequence
(OSA-LNCN3493.1):
GUAAAUUUGAAAGCAUUAGAACCAAAAACUUAUGCUGGAAUAAAACAGAUGAGCUACAAAAGAUGCAUGCACAUACUCACAAUAGCUAGAGCACAAAAAAAAAGGUCUGUUGAGUUUGUUUCUUUAUAAAUCGUAAGCCAAACAGCAUGUCAAAUAUUGAUAUGAAUGUGUGUCAUCUGACCGAAAUCUCCAUCUUGCCACUUUCAUGACCAACGACAACAGAUAUUAUCAAUUGAAAAUCCAUCAGUUAGCAUUGAGAUGACUGACAAUAAGAUUUAUUGAUGUACCAAACAGCAACCAUUCUCUUUACAAGUGCUGCCGCUUAAUUCACAACUCCUCCACAACGAUGUGCUCCACUACAGUCUGCCCGAAAAAAAUACACAAAUACUGCUAUUUCUAGCUAUCGCCAUAGCGCAUAUGAAUCAGGAUUUUUUUUUUCAUAGGAGAAUUUAACGAUUUGCGGACCAUGUAAACAUGAGAAGGCGCGAGGCUUUUUCAGCACAGCCACGGACCAAUCCUUCGCAAAAUUCCAACAAUCACACGAACAAAAUCAAACGGGGCCGCAAGUAUCCCAUGGCUAGGGUUUAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
62.8%
ME_num:
MEP:
26.63%
HE_num:
HEP:
10.37%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.96
Avg Expression:
22.06
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.2200711624182 | 7.9647755699061e-08 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.78139751858202 | 7.9609999965178e-17 |