Chr:
Chr3
Start:
4173382
End:
4179427
Strand:
+
Ref_name:
OSA-LNCN3487
Sequence
(OSA-LNCN3487.1):
UUAAUUUGCUCGUGGGCCCCACCCCACCACCUCCUCUCCCGCCAUUGUUGCCCACACUCGCACGCAUUGCUCCUCCUCCUCCUCCUCCUCGUCGCAUACAAAAGACGCGCGCGCCUCGCACUACCAGCCGCUGCACCAACCGGGCCUCGCUUGCCCAAGAACCACCACCACCACCUCCUCCUCCUCAUCCAUGGACGAGCCACCUCUCCUCCUCGCCGCCGGCGAAUAGCACCGGCGGUAUAUCCGAUCCGAUCAUCUGGUGGUGUGUUCUACGGGUUGCAGCUUCUUUCGCUGGAUAUAGGGAUCGAUCGGAAGUUUUUUUGGGAUAUGUCGGCGGCGCCGGGGACGACGGGUCGGUGGUGGUGGAGGUGGAGGCGGCGAUCGCGAGGCACGCCGCCUUCUGCCGCGCGCUCGGCUGCAGGUCCCCCGCCGCGGCGGAGCGGCUCAUCGCGGCGGUGCGGCGGCUGCUCCGCGGCGCCGGCGAGGGCGGCAGGAAGGAGAAGGCCAAGGCCGUGGUGGUGCUGGAGUUCCAUGACGCCUGAGACGACAGAUCGAAGAUCUGUUGCUCUCCCAUGGCGCUAGCUAUAGCUAGUCCUAGCCUCUUUCUCUUUUAAUUUGAAUCUCUCUACCUUAAUUGCUGCUUAAUUUUCCUAGCUUGAUUAUAUUUAGCUCGCAAUAAUUACGUGCUCAAUUUGUACGCAAAAUCCUGCAAGUUCUCCAGCUUUGUGUAACUGUGAAGGAAUGGGAAACAACAUUCUGGAGGACAAUGAGAGAUUGAGAGCUAAGGUGGAAAAAAGAAUUCCAUUUUUCUCUGUUCAUGCUGCUCAAUCCAAUUUUGACAUUUUUUUUUCAUCUUUGUGUUAUGCUUAUGCUUGCCAUGACAAGAGCAUUGGGAGAUCAAAGAUUCUGUCCAUUUCGGCUAAGAUAGGAAGCAUAAAAGAACUGAGCACAUUGUACAGUUUCUUGGUUUUGGUUGGACUCUGAGACAUAAUUGUUGGAGCUCUGUCAAAUUCAAGCAUAAUGUGACU
Sequence
(OSA-LNCN3487.2):
UUAAUUUGCUCGUGGGCCCCACCCCACCACCUCCUCUCCCGCCAUUGUUGCCCACACUCGCACGCAUUGCUCCUCCUCCUCCUCCUCCUCGUCGCAUACAAAAGACGCGCGCGCCUCGCACUACCAGCCGCUGCACCAACCGGGCCUCGCUUGCCCAAGAACCACCACCACCACCUCCUCCUCCUCAUCCAUGGACGAGCCACCUCUCCUCCUCGCCGCCGGCGAAUAGCACCGGCGGUAUAUCCGAUCCGAUCAUCUGGUGGUGUGUUCUACGGGUUGCAGCUUCUUUCGCUGGAUAUAGGGAUCGAUCGGAAGUUUUUUUGGGAUAUGUCGGCGGCGGCGGCGGCGGCGGCUGGGCAGGAGGUUAAUCCGGGCGUUGUGGUGGCGGCGGUGGUGGAGGUGGAAUGGGCGGAGUGCGCGUGCUGCGGGCUGAGGGAGGAGUGCACGCCGACGUACGCGGCGGGCGUGCGGGCGCGGUACGGCGGGCGGCGGCGAUCGCGAGGCACGCCGCCUUCUGCCGCGCGCUCGGCUGCAGGUCCCCCGCCGCGGCGGAGCGGCUCAUCGCGGCGGUGCGGCGGCUGCUCCGCGGCGCCGGCGAGGGCGGCAGGAAGGAGAAGGCCAAGGCCGUGGUGGUGCUGGAGUUCCAUGACGCCUGAGACGACAGAUCGAAGAUCUGUUGCUCUCCCAUGGCGCUAGCUAUAGCUAGUCCUAGCCUCUUUCUCUUUUAAUUUGAAUCUCUCUACCUUAAUUGCUGCUUAAUUUUCCUAGCUUGAUUAUAUUUAGCUCGCAAUAAUUACGUGCUCAAUUUGUACGCAAAAUCCUGCAAGUUCUCCAGCUUUGUGUAACUGUGAAGGAAUGGGAAACAACAUUCUGGAGGACAAUGAGAGAUUGAGAGCUAAGGUGGAAAAAAGAAUUCCAUUUUUCUCUGUUCAUGCUGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
29.88%
ME_num:
MEP:
53.86%
HE_num:
HEP:
16.06%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.89
Avg Expression:
11.26
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 5.09670097781568 | 0.000764059520066417 |
| 2 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -1.93764090032982 | 0.0296754331713711 |
| 3 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -1.68010358495014 | 0.0345168984506653 |
| 4 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.69921942851333 | 0.0348301160101903 |