Chr:
Chr3
Start:
4001616
End:
4005555
Strand:
-
Ref_name:
OSA-LNCN3484
Sequence
(OSA-LNCN3484.1):
GAGGGGCAGAUGGAGGUGAGGAGAUGACGAGGAGAGGCCGACUCCAGCAAAAAGGGUGAUGGGAGAAGCUUCACCGGUGGAAAACAUGGUUUCAAGAGGGGAGUGCAUACAUUGCUGUGGAGAUGGAGAGAGAAGAGGUAGGCAAGUGGAACUGUUGCGGUUAAGAUGGAGAAGCGUAUUGGCUGGGGUGUACAGAGAGGGGGGCAAGGGGAGGGAGAGGCUGACAGGUGGGUAUGUGAGGUAGAUCGUGGUACAUGUGUUGGUUUUUCUUAAAAAAAUGAUAUAAGGGCUGCCACGACAAUAAAUAAAGACUGAAAUGCAAACGGCAGUAUAGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
14.43%
ME_num:
MEP:
46.14%
HE_num:
HEP:
39.23%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.85
Avg Expression:
27.69
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.6555631953422 | 0.0177155691068934 |
| 2 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 6.05998762496832 | 0.0139664376240639 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 6.54231120812278 | 0.0047116528889062 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 5.54882681976874 | 0.0485563658300938 |