Chr:
Chr3
Start:
3955274
End:
3955896
Strand:
.
Ref_name:
OSA-LNCN3482
Sequence
(OSA-LNCN3482.1):
UUACCAUUACCGAUGUGCAUGGUUUGAGACCGUUGGGUUUCUGCCCAACCAUGGAGACCGGUCCCACCUGUCACCAGGCUUUAGGAGUGGCGUCACGCCCGACCGCUUCCCUUGAGAAGGGCGAUCGCCCUGGCAUAACGCCGGGGGCUACUGUCGGUGAUAUGGGACCGGGAGUAUCGUGACCAGAGGCUUGAGGCAGACACAAUCGCCCACGUGGCCUGGCACCCUCGGGGACGUCGGGCCCGAGGGUGAGGUGUCCGCUCUCCUCCUGAUUUCCCCGAGGGGGGUCGGGUUACUCGUGCCCCGGCCCCAAGGGCCGAGGCACCCCGACCCCUUGAGGAAGUUUGCGCCACGUAUAUGGGAUAGUUGAACACGGCAGUGCUCACCUAACCGCAUUUAUUGCAGUCUGGUCAAGCAUGUCACGCUGCAUGCAGCGCAGUGCAGCGCGUUCCUUUAUCCGGUCUGUGACCAGUCACAGACCGGUCAGAUCACGGGUUAGGUGGCGACUGGCGGUCUGACGCACGCCUUGCCCCAUCCCGUCAAGACGAAAGCCUCUAGGCACUCGUCUCAAGCCGGAGCUAGCGUGUUAUCUCUUAGAGAUGACACGUUAGCCCUGGUUAGAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
93.5%
ME_num:
MEP:
3.66%
HE_num:
HEP:
2.64%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.98
Avg Expression:
2.84
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 7.38153471213546 | 2.95423252095486e-05 |