Chr:
Chr3
Start:
3774541
End:
3775689
Strand:
+
Ref_name:
OSA-LNCN3478
Sequence
(OSA-LNCN3478.1):
ACUGAAAAUUGCAGGGCACAAAGAAAGUUGCAUAGCUAGAGUGCUAGUAGAAAUGAUUCUACCCAAAAGGGACAAGAAUCACAAACAUGAUGCUUCUUCUUCUUUUUUUCAGAGAGAGAGAGCAACAAAAUUAUCUUUUGUUUGCAGCCACAAACAAAUCAGUAUUCAGUACUGAUCUAUUUCUGCAUCCAACCUUUUAUUCUUCUAGACUGCAAUGCGCUGUGCACUCAAGGGAAUGACAGAAACAGACGCAGAUCCUGCUGCUUUGAUCCUUCUUUCGUCUCGAUCUCGUAGUGUCACAUGGUAGCAGUUCAGUACAGUUAUUGUGGGAUCAUAUGAUCUCAUCAGCAGUUAUCCUGGUGCAUGAAUAAAACCUGAAAUCUGUGGCUGACAUAGACGUACGUGUUUGGUCUGUUCUUCAGGAAUGGUCUGUCAGUUUCUUGAAAGAAGUUUUCUUCAGAAGAUUGCACUGAACCUGAAGAACAAAACAAAUUGGCUGCGUUCCAUGGACUUGGUAAAGCCUUUGGCUUGAUUCAUGUCGAGUCACGGGGAGCAGCAGGAAUCAAUUCCAACUCCCAGCUACGGCCUGAUCCGUUCAUUGAGCGAUAUGUCAGCCAGCAAUUCAAAGCCUGAAAUUCCCCCAUUCCUCAUCCACUACAAGACGGAGCCAACGAAAAGAAACAGUUCUGCACGAGUGCACGGGUGAAGGAGAGGAUACGAACGAGAAUCCGUCAAGUUCUAGAAGAUGGAGGUUGCAGAAUUCUGCUUGCAAGAACUUUCUUAAGCUUGUCAUCUCUCUUUCUUGCAGCAAUUGCCGAUAAACAGUUGGCUUCUUGUUGUUUAACUCGUAUUAUUACUACUAUUACAGUUUCACUGUCACUGUUUCCAGAUUGGAUGAUGGAUGAGAUCGAGUUGAGUUAGGCAGCGUUGCACUACUUACAUGGCUUUGCUAUGCUGAGAGAAAAUUUUAUAUGAACGGCAAUUAAACCCAAAGGUGCUUUGCUUUGCUUAGUCAAAUCCAUAAAAGGAAAAGAUUAAACAAAGCGUCAGAGAUAUGCUAAACAACUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
81.1%
ME_num:
MEP:
18.5%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.87
Avg Expression:
0.98
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 2.29408267587018 | 0.0254957978252608 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.17476533786004 | 0.0300946235614721 |
| 3 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -4.59749110264555 | 4.42171655010896e-08 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 4.06511105240201 | 0.0356325434433699 |
| 5 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -3.72264857959494 | 5.71314037371796e-06 |