OSA-LNCN3471


Function Link


Basic Info

Chr:

Chr3

Start:

3444293

End:

3453268

Strand:

-

Ref_name:

OSA-LNCN3471

Sequence
(OSA-LNCN3471.1):

UUACUACUAGCUUCAAUUCUUCAGCCAUUUUAAUUCACGUAGGCAGCAGCCAGCUUGAAUUCUUGUCUGCCAUCUCUGAAACAAAUCUAGUUAGUACAGUAUUGUAGUAACUGCAUCUGAAUUAUAUUCAUGGCGUCGUCGUCGGCAAUGGUGAGGGUGGUGUUGGUGUCCGUGCUGCUGAUGCAGUGCUGCAACGCGAUCAUGGCGGCGAGGCUGCUGGAAGGCGACUUGGGCAGCUGGUUGCAGGGCCAGGGCGGCGUCGCCGGCGAGCUCAUCUUGCAGGUGCUCAAGGGAGGGUCGCCACCGGUAGGCAAUGAUUGCCACCAAGGUCCCGGAGGCGGCUCCGGAGCCACCUGCUACCCGCCGUAACUAGCCUCGCCGGCCACCGGCGCACCGGCGCGCCGCCGGCCGGCCGGCCAACGCGCAUCCAUGGGUGGAUCGCGGCCGGUUUUGCUUGUUCGCGUGCGAGCCGUUAACAUGUAGACAUGGAGAUUUGGAGAGCCGAGUAGAGAUCCACUGUUCAUUUUGGUUCAAUUCCUUUAUUCUUUUUUUUUUCUUCCCUGAUGUGUGAGUGCUUCGUCUGUCCAUGCAAAAAUGCUGGAGCCUCUCAAAGGUAGCUGUUCAUCCAUGUAGAAAUGGAGUAGUUUAGUCGAUUUAGGCGCAUUGAUUUGGAAUAAUUAAGGGUGAUCCUGACAUCUACUAGGAGUCUAGGUGAAAGUCUGUGUAAUUAGUCAUGUUGAAUGCUUGAUAAUUGUAUAUAAGAAUCAUGGAGUCACAAUGAAACAAGAGAUACACUCCUAUAUAUUUUACCUUUCCUGUUGGUUUCCUUUAAUACAACAG

Sequence
(OSA-LNCN3471.2):

CACAGCCACCAAAACUCUAUAUAUAACCAGCCAAUCGAUCCUGCCUCCCCACAACCACACAAACAACUAUAGUUUCAGUUCUUCAGCCAUUUUCUCGUACGUACGUACGCAGCCAGCUUGGAUUCUUGUCUGCCACUCCGAAUUAAUUAAUUUAAACAAUCUAGCCGAUUGAUCGAAUCAACAGCCGAAUUAAUCAAGCUCUAGUUAGGUUGCUACUACUAGUACAGUAGUACGUACGUACUGCAGCUGAAUAUAUAUACAUGGCGUGGUCGUCGUCGUCGUCGGCGACGGUGAGGGUGGUGGUGGUGGCCGUGCUGCUGAUGCAGUGCUGCAACGCGAUCAUGGCGGCGAGGCUGCUGGAAGGCGACUUGGGCAGCUGGUUGCAGGGCCAGGGCGGCGUCGCCGGCGAGCUCAUCUUGCAGGUGCUCAAGGGAGGGUCGCCACCGGUAGGCAAUGAUUGCCACCAAGGUCCCGGAGGCGGCUCCGGAGCCACCUGCUACCCGCCGUAACUAGCCUCGCCGGCCACCGGCGCACCGGCGCGCCGCCGGCCGGCCGGCCAACGCGCAUCCAUGGGUGGAUCGCGGCCGGUUUUGCUUGUUCGCGUGCGAGCCGUUAACAUGUAGACAUGGAGAUUUGGAGAGCCGAGUAGAGAUCCACUGUUCAUUUUGGUUCAAUUCCUUUAUUCUUUUUUUUUUCUUCCCUGAUGUGUGAGUGCUUCGUCUGUCCAUGCAAAAAUGCUGGAGCCUCUCAAAGGUAGCUGUUCAUCCAUGUAGAAAUGGAGUAGUUUAGUCGAUUUAGGCGCAUUGAUUUGGAAUAAUUAAGGGUGAUCCUGACAUCUACUAGGAGUCUAGGUGAAAGUCUGUGUAAUUAGUCAUGUUGAAUGCUUGAUAAUUGUAUAUAAGAAUCAUGGAGUCACAAUGAAACAAGAGAUACACUCCU

Sequence
(OSA-LNCN3471.3):

CACAGCCACCAAAACUCUAUAUAUAACCAGCCAAUCGAUCCUGCCUCCCCACAACCACACAAACAACUAUAGUUUCAGUUCUUCAGCCAUUUUCUCGUACGUACGUACGCAGCCAGCUUGGAUUCUUGUCUGCCACUCCGAAUUAAUUAAUUUAAACAAUCUAGCCGAUUGAUCGAAUCAACAGCCGAAUUAAUCAAGCUCUAGUUAGGUUGCUACUACUAGUACAGUAGUACGUACGUACUGCAGCUGAAUAUAUAUACAUGGCGUGGUCGUCGUCGUCGUCGGCGACGGUGAGGGUGGUGGUGGUGGCCGUGCUGCUGAUGCAGUGCUGCAACGCGAUCAUGGCGGCGAGGCUGCUGGAAGGUGACUUAUUUGGUAGCAGCAGCUGGCUGCAGGGCCAGGUCGGCGCCGCCGGCGAGCUCAUCUUGCAGGUCCUUGACAAGGGCACGUCGGAUUCGGAAGGCAAUGGUUGUCACCAAGGUCCCGGAGGCGGCUCCGGAGCCAGCUGCCACCAACCGUAACUAGCCGCGCCGGCGCGCCGCCGGCCGGCCAACGCGCAUCGUCCCGUCCAUGGGUGGAUCGCGGCCGGUUUUGCUCGAUCGCUAGCUGCAGCUGCCGUGCGAGCUGUUAACAUGUAGACAUGAAGAUUGGAGAUCUUCAUAGACAUUGAUCAACUGUUCAUUAUUGGUUAAAUUUAUUCUUUUUCUUCUUCUUCUUUUAUCUGUGAGAGAGCUUCAUCCAUGCAAAAAUGCUGGAAAGCCUCGCAAAGCUAGCUGUUCAUCCAUGUAGAAAUGGAGUAGUUUAGUCAGUUUAGGAUUGAUUUGGAAUAAUUAAGGUGAUCCUGACAGCUACUAGCUAGCUACCUCUAGGUCCUAAAAAUCUGUAAUUAGUCAUGUUGGAUGCUUGAUAUAUACUUGUACGUACGUAUAGAUCGAUCAUGGAGUCACAAUGAAACAAGAUGCUACUCCUAUAUAUUUUACCUUUCCUGUUGAUUCUUAAUACAACAGCGC

Sequence
(OSA-LNCN3471.4):

CACAGCCACCAAAACUCUAUAUAUAACCAGCCAAUCGAUCCUGCCUCCCCACAACCACACAAACAACUAUAGUUUCAGUUCUUCAGCCAUUUUCUCGUACGUACGUACGCAGCCAGCUUGGAUUCUUGUCUGCCACUCCGAAUUAAUUAAUUUAAACAAUCUAGCCGAUUGAUCGAAUCAACAGCCGAAUUAAUCAAGCUCUAGUUAGGUUGCUACUACUAGUACAGUAGUACGUACGUACUGCAGCUGAAUAUAUAUACAUGGCGUGGUCGUCGUCGUCGUCGGCGACGGUGAGGGUGGUGGUGGUGGCCGUGCUGCUGAUGCAGUGCUGCAACGCGAUCAUGGCGGCGAGGCUGCUGGAAGGUGAUCUGGGCAGCUGGCUGCAGGGUCAGGGCGGCGUCGCCGGCGAGCUCAUCUUGCAGGUGCUCAAGGGAGGGUCGCCGCCGGGAGGCAAUGGUUGUCACCAAGGUCCCGGAGGCGGCUCCGGAGGCAACUGCUACCAACCGUAACUAGCCUCGCCGGCCGGCCAACGCGCAUCUGUCGCAUCCAUGGGUGGAUCGCGGCCGGUUUUGCUCGAUCGCUAGCUGCAGCUGGCGUGCGAGCCGUUAACAUGUAGUAGUGAUGAAGAUUGGAGAUCUGCGUAGAGAUUGAUCAACUGUUCAUUUGGUUGAAUUCCUUUAAUUCUUUUUUUUUCUUCUAUGAGAGCUUCAUCCAUGCAAAAAUGCUGGAAAGCCUCGCAAAGCUAGCUGCUGUUCAUCCAUGUAGAAAUGAGUAGUUUAAUUAGUCAAUUUAGGAUUGAUUUGGAAUAAUUAAGGUGAUCCUGACAGCUACUAGCUAGCUACCUCUAGGUCCUAAAAAUCUGUAAUUAGUCAUGUUGGAUGCUUGAUAUAUACUUGUACGUACGUAUAGAUCGAUCAUGGAGUCACAAUGAAACAAGAUGCUACUCCUAUAUAUUUUACCUUUCCUGUUGAUUCUUAAUACAACAGCGC


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

462

LEP:

93.9%

ME_num:

12

MEP:

2.44%

HE_num:

17

HEP:

3.46%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

1.00

Avg Expression:

4.86

Tip: OSA-LNCN3471 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated6.215757883266681.33260472382952e-13
2Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day"3.470797691428410.0474592452656597
3Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated7.12547393500331.72855292565279e-17