Chr:
Chr3
Start:
3444293
End:
3453268
Strand:
-
Ref_name:
OSA-LNCN3471
Sequence
(OSA-LNCN3471.1):
UUACUACUAGCUUCAAUUCUUCAGCCAUUUUAAUUCACGUAGGCAGCAGCCAGCUUGAAUUCUUGUCUGCCAUCUCUGAAACAAAUCUAGUUAGUACAGUAUUGUAGUAACUGCAUCUGAAUUAUAUUCAUGGCGUCGUCGUCGGCAAUGGUGAGGGUGGUGUUGGUGUCCGUGCUGCUGAUGCAGUGCUGCAACGCGAUCAUGGCGGCGAGGCUGCUGGAAGGCGACUUGGGCAGCUGGUUGCAGGGCCAGGGCGGCGUCGCCGGCGAGCUCAUCUUGCAGGUGCUCAAGGGAGGGUCGCCACCGGUAGGCAAUGAUUGCCACCAAGGUCCCGGAGGCGGCUCCGGAGCCACCUGCUACCCGCCGUAACUAGCCUCGCCGGCCACCGGCGCACCGGCGCGCCGCCGGCCGGCCGGCCAACGCGCAUCCAUGGGUGGAUCGCGGCCGGUUUUGCUUGUUCGCGUGCGAGCCGUUAACAUGUAGACAUGGAGAUUUGGAGAGCCGAGUAGAGAUCCACUGUUCAUUUUGGUUCAAUUCCUUUAUUCUUUUUUUUUUCUUCCCUGAUGUGUGAGUGCUUCGUCUGUCCAUGCAAAAAUGCUGGAGCCUCUCAAAGGUAGCUGUUCAUCCAUGUAGAAAUGGAGUAGUUUAGUCGAUUUAGGCGCAUUGAUUUGGAAUAAUUAAGGGUGAUCCUGACAUCUACUAGGAGUCUAGGUGAAAGUCUGUGUAAUUAGUCAUGUUGAAUGCUUGAUAAUUGUAUAUAAGAAUCAUGGAGUCACAAUGAAACAAGAGAUACACUCCUAUAUAUUUUACCUUUCCUGUUGGUUUCCUUUAAUACAACAG
Sequence
(OSA-LNCN3471.2):
CACAGCCACCAAAACUCUAUAUAUAACCAGCCAAUCGAUCCUGCCUCCCCACAACCACACAAACAACUAUAGUUUCAGUUCUUCAGCCAUUUUCUCGUACGUACGUACGCAGCCAGCUUGGAUUCUUGUCUGCCACUCCGAAUUAAUUAAUUUAAACAAUCUAGCCGAUUGAUCGAAUCAACAGCCGAAUUAAUCAAGCUCUAGUUAGGUUGCUACUACUAGUACAGUAGUACGUACGUACUGCAGCUGAAUAUAUAUACAUGGCGUGGUCGUCGUCGUCGUCGGCGACGGUGAGGGUGGUGGUGGUGGCCGUGCUGCUGAUGCAGUGCUGCAACGCGAUCAUGGCGGCGAGGCUGCUGGAAGGCGACUUGGGCAGCUGGUUGCAGGGCCAGGGCGGCGUCGCCGGCGAGCUCAUCUUGCAGGUGCUCAAGGGAGGGUCGCCACCGGUAGGCAAUGAUUGCCACCAAGGUCCCGGAGGCGGCUCCGGAGCCACCUGCUACCCGCCGUAACUAGCCUCGCCGGCCACCGGCGCACCGGCGCGCCGCCGGCCGGCCGGCCAACGCGCAUCCAUGGGUGGAUCGCGGCCGGUUUUGCUUGUUCGCGUGCGAGCCGUUAACAUGUAGACAUGGAGAUUUGGAGAGCCGAGUAGAGAUCCACUGUUCAUUUUGGUUCAAUUCCUUUAUUCUUUUUUUUUUCUUCCCUGAUGUGUGAGUGCUUCGUCUGUCCAUGCAAAAAUGCUGGAGCCUCUCAAAGGUAGCUGUUCAUCCAUGUAGAAAUGGAGUAGUUUAGUCGAUUUAGGCGCAUUGAUUUGGAAUAAUUAAGGGUGAUCCUGACAUCUACUAGGAGUCUAGGUGAAAGUCUGUGUAAUUAGUCAUGUUGAAUGCUUGAUAAUUGUAUAUAAGAAUCAUGGAGUCACAAUGAAACAAGAGAUACACUCCU
Sequence
(OSA-LNCN3471.3):
CACAGCCACCAAAACUCUAUAUAUAACCAGCCAAUCGAUCCUGCCUCCCCACAACCACACAAACAACUAUAGUUUCAGUUCUUCAGCCAUUUUCUCGUACGUACGUACGCAGCCAGCUUGGAUUCUUGUCUGCCACUCCGAAUUAAUUAAUUUAAACAAUCUAGCCGAUUGAUCGAAUCAACAGCCGAAUUAAUCAAGCUCUAGUUAGGUUGCUACUACUAGUACAGUAGUACGUACGUACUGCAGCUGAAUAUAUAUACAUGGCGUGGUCGUCGUCGUCGUCGGCGACGGUGAGGGUGGUGGUGGUGGCCGUGCUGCUGAUGCAGUGCUGCAACGCGAUCAUGGCGGCGAGGCUGCUGGAAGGUGACUUAUUUGGUAGCAGCAGCUGGCUGCAGGGCCAGGUCGGCGCCGCCGGCGAGCUCAUCUUGCAGGUCCUUGACAAGGGCACGUCGGAUUCGGAAGGCAAUGGUUGUCACCAAGGUCCCGGAGGCGGCUCCGGAGCCAGCUGCCACCAACCGUAACUAGCCGCGCCGGCGCGCCGCCGGCCGGCCAACGCGCAUCGUCCCGUCCAUGGGUGGAUCGCGGCCGGUUUUGCUCGAUCGCUAGCUGCAGCUGCCGUGCGAGCUGUUAACAUGUAGACAUGAAGAUUGGAGAUCUUCAUAGACAUUGAUCAACUGUUCAUUAUUGGUUAAAUUUAUUCUUUUUCUUCUUCUUCUUUUAUCUGUGAGAGAGCUUCAUCCAUGCAAAAAUGCUGGAAAGCCUCGCAAAGCUAGCUGUUCAUCCAUGUAGAAAUGGAGUAGUUUAGUCAGUUUAGGAUUGAUUUGGAAUAAUUAAGGUGAUCCUGACAGCUACUAGCUAGCUACCUCUAGGUCCUAAAAAUCUGUAAUUAGUCAUGUUGGAUGCUUGAUAUAUACUUGUACGUACGUAUAGAUCGAUCAUGGAGUCACAAUGAAACAAGAUGCUACUCCUAUAUAUUUUACCUUUCCUGUUGAUUCUUAAUACAACAGCGC
Sequence
(OSA-LNCN3471.4):
CACAGCCACCAAAACUCUAUAUAUAACCAGCCAAUCGAUCCUGCCUCCCCACAACCACACAAACAACUAUAGUUUCAGUUCUUCAGCCAUUUUCUCGUACGUACGUACGCAGCCAGCUUGGAUUCUUGUCUGCCACUCCGAAUUAAUUAAUUUAAACAAUCUAGCCGAUUGAUCGAAUCAACAGCCGAAUUAAUCAAGCUCUAGUUAGGUUGCUACUACUAGUACAGUAGUACGUACGUACUGCAGCUGAAUAUAUAUACAUGGCGUGGUCGUCGUCGUCGUCGGCGACGGUGAGGGUGGUGGUGGUGGCCGUGCUGCUGAUGCAGUGCUGCAACGCGAUCAUGGCGGCGAGGCUGCUGGAAGGUGAUCUGGGCAGCUGGCUGCAGGGUCAGGGCGGCGUCGCCGGCGAGCUCAUCUUGCAGGUGCUCAAGGGAGGGUCGCCGCCGGGAGGCAAUGGUUGUCACCAAGGUCCCGGAGGCGGCUCCGGAGGCAACUGCUACCAACCGUAACUAGCCUCGCCGGCCGGCCAACGCGCAUCUGUCGCAUCCAUGGGUGGAUCGCGGCCGGUUUUGCUCGAUCGCUAGCUGCAGCUGGCGUGCGAGCCGUUAACAUGUAGUAGUGAUGAAGAUUGGAGAUCUGCGUAGAGAUUGAUCAACUGUUCAUUUGGUUGAAUUCCUUUAAUUCUUUUUUUUUCUUCUAUGAGAGCUUCAUCCAUGCAAAAAUGCUGGAAAGCCUCGCAAAGCUAGCUGCUGUUCAUCCAUGUAGAAAUGAGUAGUUUAAUUAGUCAAUUUAGGAUUGAUUUGGAAUAAUUAAGGUGAUCCUGACAGCUACUAGCUAGCUACCUCUAGGUCCUAAAAAUCUGUAAUUAGUCAUGUUGGAUGCUUGAUAUAUACUUGUACGUACGUAUAGAUCGAUCAUGGAGUCACAAUGAAACAAGAUGCUACUCCUAUAUAUUUUACCUUUCCUGUUGAUUCUUAAUACAACAGCGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
93.9%
ME_num:
MEP:
2.44%
HE_num:
HEP:
3.46%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
1.00
Avg Expression:
4.86
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 6.21575788326668 | 1.33260472382952e-13 |
2 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 3.47079769142841 | 0.0474592452656597 |
3 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 7.1254739350033 | 1.72855292565279e-17 |