RiceNCexp:Browse

OSA-LNCN3468

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr3

Start:

3199115

End:

3200344

Strand:

Ref_name:

OSA-LNCN3468

Sequence
(OSA-LNCN3468.1):

GUUCGCUGCAAAUUAUAAUUCAAUUUCAUAUUUUAAUUUCUGAUGGCGAUAUGAGUUCGUAUCGUUCCGUUAUGAAAUCUCCAUACUUUUUUCAGGAAUAAAAAUGAACAUAUCUGCCUGUGAGGCCGGAACCUUCAGCUACGAACGGCAGUAAGGAAAAUGGACAGAAAUUGUAGUAGUUCAGGCGAAGCUAUCGGCGACAGGAUCAUGAGAAGCUUCGUGUUCAUGGUGAAGAAGAGGCGAAUUAGCACUCUGAUUCUCUCCAUCUGGUCGGCGAUUACGCGUGUAAUCUACCAAUCCGACUGGAGAAAGCUUGUGUAGCUGUAUGAUCCAAUGCAUCCAUGUCGACGAGCAGGCAGAUUUCUGAUCUUUUUUGGACGCGGCAACUGCUCCAAUCCCCUCCAUUGGCAGCAUUCGCCGUCAAACGAUUCCAUGGUGAGCAGCUACCUGCCGGAAACAAGAAUAUGUGCGAUACUUUCAUCCGAUUCGAAGGGUAAAGAAUAUCCUUGUUGUUCAGAGUUCAGACUGCUCUGUGAGAUUGCCCACCAUGGCGUGCACCAUCUUUGUAAUCUCAUGGAAAAGAGAGAGAAGAGCACUCGAUAUUUCGGUGCGUGAAUCUCCAAGUCCAUUAGCCAUACUUGGUUCAUUCUGUAAAAAAGAACAAAGAACAUAACAGAACAAGGCCAGUGAGAAAGAAAGAUUGUAUAGCUAGUACUCCCUCCGUUUUAGGUUAUAAAACGUUUUGGCUCUGGUUAAAGUUAAUCUACUUCAGAUUUAACUAAGUUU

Sequence
(OSA-LNCN3468.2):

GUCAUUAUUGUAAUUCUUUAAAAUGUUUAGCUUAAGUGGCAGCAUAGUGAUAGUAUCGAGUUUCAACAAACUAGUCGAGGUAGCAAUUGGAAUUACUCUUGUUCAUCUAAUGGUAACAGUAACACUCGCUUUGACUGGUCCAUUUGGUUAGUGGACUAAACUGACUAUGUCAUUUGCAUUUCUUUCUAAUCUAAUCACGAUCAGUCGUUCAGAGUGCGUGCCUGGAGAUUGGUUCAUUCAUGGCGAUGGUACAGUAGUGCAGGUACCGAUACGACCACUGAUGUUAGAACAAGAGCCAAGUGAAGUAGUGAACUCACGAUCACAAGCGAAGUGUCCCCUCAAUGUGCAAGGCUCACUUGGAAUAAAAAUGAACAUAUCUGCCUGUGAGGCCGGAACCUUCAGCUACGAACGGCAGUAAGGAAAAUGGACAGAAAUUGUAGUAGUUCAGGCGAAGCUAUCGGCGACAGGAUCAUGAGAAGCUUCGUGUUCAUGGUGAAGAAGAGGCGAAUUAGCACUCUGAUUCUCUCCAUCUGGUCGGCGAUUACGCGUGUAAUCUACCAAUCCGACUGGAGAAAGCUUGUGUAGCUGUAUGAUCCAAUGCAUCCAUGUCGACGAGCAGGCAGAUUUCUGAUCUUUUUUGGACGCGGCAACUGCUCCAAUCCCCUCCAUUGGGUAAGGAAAGAAGAAAACGACCUGGCGAUUGAUUGGUACUUGCACGACAAUUGCUUGAUUUUUAUCUCUUUUUGUUGGUACACAGCAGCAUUCGCCGUCAAACGAUUCCAUGGUGAGCAGCUACCUGCCGGAAACAAGAAUAUGUGCGAUACUUUCAUCCGAUUCGAAGGGUAAAGAAUAUCCUUGUUGUUCAGAGUUCAGACUGCUCUGUGAGAUUGCCCACCAUGGCGUGCACCAUCUUUGUAAUCUCAUGGAAAAGAGAGAGAAGAGCACUCGAUAUUUCGGUG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

LEP:

6.5%

ME_num:

338

MEP:

68.7%

HE_num:

121

HEP:

24.59%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

callus

Tau :

0.81

Avg Expression:

17.09

Tip: OSA-LNCN3468 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	-1.0352319149707	0.0255805339479845
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA	-2.11768340172848	0.00101295190673345
3	Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated	-2.32928196215813	1.2234109439274e-07
4	Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min"	1.87702806460113	0.00016303427176122
5	Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days"	2.69913885586877	0.000343514667876022
6	Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl	1.1555317779927	0.0393112039529963
7	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	-1.94766713650434	0.000197916088407824
8	Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2"	1.64690941429858	0.00390559154235357
9	Nipponbare // leaf // control--/--Nipponbare // leaf // drought	1.64681105133463	0.00396879358177351
10	Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1"	1.64673411279512	0.00392882210819794
11	Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day	1.67597251484232	0.000476047826822335
12	Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae	2.16199802377914	2.28196055971738e-34
13	Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day	1.01506090151346	0.0274583352148216
14	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA	-1.3325532971497	0.0108640683057226
15	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA	-2.28857979276918	9.06648992958288e-05