Chr:
Chr3
Start:
2996615
End:
2997428
Strand:
-
Ref_name:
OSA-LNCN3466
Sequence
(OSA-LNCN3466.1):
ACUUCUUUUCCGGAAGCCAAUCUCCAAAGAACUCUAGGGUUAAGCGUGCUUGGCCUGGAGCAAUUUGGGAUGGGUGACCGACCGGGAAAUUCUUCCCGGGUGCACACGAGUGAGGACAAAGUGUGCAGAAAAGAUAUGUGUUGGUCUGUGAGGGCAGUCUAUGACCUAUGAAAGCUAUCAGAUGUAAGCGGGCCCGGCCUGGGGGAAGGCGGGACGUUACAAAAUGGUAUCACACAUGGACGUGGCCAAGAGAUGACGUUCCUGGCCUAGGGUUGAUCGACGGGGGCGUCGAUCUCUCUUAAGGGGGUGAGGGUAAUACUCAUAUCAACAAGUUGCAACUUCUUUUCUGGAAGCCAAUCUCCAAAGAAUUCCAGGGUUAAGCGUGCUUGGCCUGUAAGCGGGCCCGGCCUGGGGGAAGGCGGGACGUUACAAAAUGGUAUCACACAUGGACGUGGCCAAGAGAUGACGUUCCUGGCCUAGGGUUGAUCGACGGGGGCGUCGAUCUCUCUUAAGGGGGUGAGGGUAAUACUCAUAUCAACAAGUUGCAACUUCUUUUCUGGAAGCCAAUCUCCAAAGAAUUCCAGGGUUAAGCGUGCUUGGCCUGGAGCAAUUUGGGAUGGGGGACCGACCGGGAAAUUCUUUCCGGGUGCACACGAGUGAGGACAAAGUGUGCAGAAAAGAUGUGUGACCUAUGAAAGCUAUCAGAUGUAAGCGGGCCCGGCCUGGGGGAAGGCGGCGGGACGUUACACUUUGCUUCCGAUUUCUACAGAUGCUUCAA
Sequence
(OSA-LNCN3466.2):
ACUUCUUUUCCGGAAGCCAAUCUCCAAAGAACUCUAGGGUUAAGCGUGCUUGGCCUGGAGCAAUUUGGGAUGGGUGACCGACCGGGAAAUUCUUCCCGGGUGCACACGAGUGAGGACAAAGUGUGCAGAAAAGAUAUGUGUUGGUCUGUGAGGGCAGUCUAUGACCUAUGAAAGCUAUCAGAUGUAAGCGGGCCCGGCCUGGGGGAAGGCGGGACGUUACAAAAUGGUAUCACACAUGGACGUGGCCAAGAGAUGACGUUCCUGGCCUAGGGUUGAUCGACGGGGGCGUCGAUCUCUCUUAAGGGGGUGAGGGUAAUACUCAUAUCAACAAGUUGCAACUUCUUUUCUGGAAGCCAAUCUCCAAAGAAUUCCAGGGUUAAGCGUGCUUGGCCUGUAAGCGGGCCCGGCCUGGGGGAAGGCGGGACGUUACAAAAUGGUAUCACACAUGGACGUGGCCAAGAGAUGACGUUCCUGGCCUAGGGUUGAUCGACGGGGGCGUCGAUCUCUCUUAAGGGGGUGAGGGUGUAACAUCCCGGUCUAGGGCUUAAUAGGAUUAAUAGAAUACUCAUAUCAACAAGUUGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
86.79%
ME_num:
MEP:
10.37%
HE_num:
HEP:
2.64%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.95
Avg Expression:
4.51
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.01302729621594 | 0.0158090794933457 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.17116845618638 | 0.0120940081089371 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.27925422600442 | 0.00487893482855056 |