Chr:
Chr3
Start:
2705026
End:
2705296
Strand:
.
Ref_name:
OSA-LNCN3462
Sequence
(OSA-LNCN3462.1):
AAUCUCCAAAGAACUCCAGGGUUAAGCGUGCUUGGCCUAGAGCAAUUUGGGAUGGGUGACUGACCGGGAAAUUAUUCCCGGGUGCACACGAGUGAGGACAAAGUGUGCAGAAAAGACAUGUGUUGGUCUGUGAGGGCAGUCUAUGACCUAUGAAAGCUAUCAGAUGUAAGUGGGCCCGGCCUAGGGGAAGGCGACGGUUUCACGGACGCGUGUGUAACAUCCCGGCCUAGGGCUUAAUAGGAUUAAUAGAAUACUCAUAUCAACAAGUUGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
86.59%
ME_num:
MEP:
12.6%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.91
Avg Expression:
1.40
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.02145566388861 | 0.00666656198213249 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.11875623067714 | 0.00196339976919507 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.97158890278727 | 0.000419802028671061 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.45819406010075 | 0.000549746286177433 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.71030774127241 | 0.000948581260791569 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | -3.56747984831787 | 0.00178707034551692 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -3.19535343086652 | 0.0029101304262818 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.79086236998417 | 0.00446951571998997 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -4.05008078811015 | 0.000711755968006363 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.56715997763385 | 0.0094779062650506 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.01973902903173 | 0.000122673235345969 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.19700490251773 | 0.00318618113546069 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hN | -3.28058655064791 | 0.00482803646296867 |