RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN3460

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr3

Start:

2456948

End:

2463893

Strand:

+

Ref_name:

OSA-LNCN3460

Sequence
(OSA-LNCN3460.1):

AUUUUCAGUGAUGAAUGCUAUAUGCUCGAAGCACAUUCAUUACAGGUCGCAAAAAGAAAUGGAUAUGGAUUGGGUCCAUCAUGGAAACAGACACAAAUUUCUUUUCAGUACUAAUACGAAUCAUUGCCAUGGGUUAACAUUGAGGCGAUUACGCCACCCAAUUUGGUGAGAAGAUAGCAGGUGGAGGUUAGCAGGGCUGGGCAUCCCUUGCUUCAGGUCUUGCUGUCCAUUCAUGCUGCUAGGACAUUUACCACGUUGGUGCUUCAUAUGCAACAGCAUGGACCAAUUUACUAUGCCAUGUCCUAAGAAGGUUUGUGCAUGACAAGAAGGGCUAGAGAAUAUAUGCAUUAGUGUACUUGAAACAAAACAGGGUAGAGUGGCCCAAUGGCACUAUUUGUCUUUCCAAAUCGCCACUAUGUCAGUACAGAUAAACGAAUAGAGUAUGUCCUUGCAGGAUGUAAAUGUUAACUCAAGUUACAUUUCAUGAACAUAUUUGGAUCUCUUUUUUGUCCACACGCAGCGUAGCGCGUGUCUAUUGCUAGUAGUAAUUAGACACAGAGUAGAUAUGUUCCAAAGGUGGUGAGAAUUAGGCCUUGUUUAGUUGAAGAAAAUUUUUAGGCUUGGUUGUCACAUCGGAUAUACGGAUACACAUUUAAAGUAUUAAGCGUAGUCUAAUAACAAAACAAAUUACAGAUACCGCCAGGAAAUGCGAGAUGAAUUUAUUAAGCCUAAUUAAUCUAUCAUUAGCAAAUGUUGACUGUAGCACCACAUUAUCAAAUCAUGGCGUAAUUAGGCUUAAAAGAUUCGUCUCGUAAUUUACACGCAAUCUAUGUAAUUGGUUUUUUUUCUACAUUUAAUACUCUAUACAUGUGUUUAAACAUUCGAUAUGAUUUCAUAAAAAAUUUUAUUUUCGGAAGUAAACAGGCCUUACUAAUGCUAGAUCGAUCUGACAGAGGCCGUUGACCAUUGAUUCAUUGAAUUAAUACUCCUAUCUCCAGGAGUGUGAAUACGGUGUGGUGUCCAGCCUCUGGAUCUGUCGGUAAGACAGUAAUUAGGAGUGCACUAGAAGCGCACUAGGUCAGUAAUAGCCCAAACCUAAACGGCUAGAAGUAUUGACGAGUUCGUCGCAUCUGCAUUGUCUAAUUUUUUUUUUCGAGACGACACGUGUUCUUACAUAAAUAUAUAUACGCUCAUUACUAUAAACACACAUAGUACCGUAUAAGCAUAUUAAAAGAUUUAUUGAAACCGUAUUGUUUUGAUAUUUUUGAAGUUGUCAUAGACAUCUCAUCAACAAUAGCCAAAUGCCUCGAAAAAAAAAGCGCCAAAUGCGAGCACCCGUAAAUGCAAUGCCUAGAUUUUGGUAAGUUAACUAAGGCUGUAUUCGGGAGGUGAGAUGGGGAACUCACCUCCUGUGCAUGCAAAAUAGAGCGACGCAUUUUCUUAUGAUUAAUUAAGUAUUUAUUUUUUAAAAAUUAUAUUAAUAUAAUUUUUAAAGCAGCUUUUAUAUAGAAAAUUUUUUAAAAAAACAUAUCAUAUUUAGCCGUUUGAAAAGCGUGCAUGUGGAACACGAGGGGUGUGAGUUGGGAAACUCACCGAAAAUAAUACAACCUAAUUACUCCUUGAAACAGCGAACCAUCAUUUUCAUUCGGUGGCGGAGCUAGACCCGGCUACCAUGGGCAAUGGCUCGGGCUCCGCCUGGCAAAUGCAGCUAUGCAUCCAUAGAUUAACACUUAAUUAGCUUGCUAAUUACAUUGCUUAGUUCACUACUAGGCCGUAUGAAGCAACACCACAUCGACAGAUGUGCUUAACACAAACUUAUAAAGCAAAUGCUCAUGUUAAAAUGAUCUAUGUAUUAUAUAGACUUGUAUAUUUUUUUUUUGUUUGCUAGGUUUGCUCGAGCUCAUAAAAUAUUUUGAAUCCGCCACUGUUUUAAUUAAAUAGAGGAGUAAAACUGUACAAGUGUACAAAGUGAAAAAGGAGAUAAUGUAAUGCUCAGGACCUUCAGUCCGAGCUUACUAAAACUCUAGACAACUGCCGAGAUGUAAUACCGUUGCUUAUAAUUCACCCGUAAAUGCAUUGGCUAGAUUUUGGUAAGUUAACUAAUUAUUACGAGUCUUAGUUUUUGUAAUACAGCCGCUUGUAAUUUACUGUUUGUAAUGCGAGUACACCAGUAUUUUUUUUUUAGCAAAACCGAUUUCUUUUACUUAUAUUUGAG

Sequence
(OSA-LNCN3460.2):

AAUAACUUCUGGCCCUAUAUCUUGAAAGGAAUGUUUAGGUACACAGCUCAAAAUUGCAAUAUAUUUUGGGACAGAGGUAGUAUACUUUUUUUCAGCUGUACUGAUGUCACUAAUCGCACAUAACGGAGGAUUGUUGUUGACUAGGGCAUCGGCAUGCUACACUUGAAAAAAGGCCAUAGUGUAUUGAUUCCUGUGCAUCGCUUCUUUCUGGAGUUCAGUUACCACGUUGGUGCUUCAUAUGCAACAGCAUGGACCAAUUUACUAUGCCAUGUCCUAAGAAGGUUUGUGCAUGACAAGAAGGGCUAGAGAAUAUAUGCAUUAGUGUACUUGAAACAAAACAGGGUAGAGUGGCCCAAUGGCACUAUUUGUCUUUCCAAAUCGCCACUAUGUCAGUACAGAUAAACGAAUAGAGGAUGUAAAUGUUAACUCAAGUUACAUUUCAUGAACAUAUUUGGAUCUCUUUUUUGUCCACACGCAGCGUAGCGCGUGUCUAUUGCUAGUAGUAAUUAGACACAGAGUAGAUAUGUUCCAAAGGUGGUGAGAAUUAGGCCUUGUUUAGUUGAAGAAAAUUUUUAGGCUUGGUUGUCACAUCGGAUAUACGGAUACACAUUUAAAGUAUUAAGCGUAGUCUAAUAACAAAACAAAUUACAGAUACCGCCAGGAAAUGCGAGAUGAAUUUAUUAAGCCUAAUUAAUCUAUCAUUAGCAAAUGUUGACUGUAGCACCACAUUAUCAAAUCAUGGCGUAAUUAGGCUUAAAAGAUUCGUCUCGUAAUUUACACGCAAUCUAUGUAAUUGGUUUUUUUUCUACAUUUAAUACUCUAUACAUGUGUUUAAACAUUCGAUAUGAUUUCAUAAAAAAUUUUAUUUUCGGAAGUAAACAGGCCUUACUAAUGCUAGAUCGAUCUGACAGAGGCCGUUGACCAUUGAUUCAUUGAAUUAAUACUCCUAUCUCCAGGAGUGUGAAUACGGUGUGGUGUCCAGCCUCUGGAUCUGUCGGUAAGACAGUAAUUAGGAGUGCACUAGAAGCGCACUAGGUCAGUAAUAGCCCAAACCUAAACGGCUAGAAGUAUUGACGAGUUCGUCGCAUCUGCAUUGUCUAAUUUUUUUUUUCGAGACGACACGUGUUCUUACAUAAAUAUAUAUACGCUCAUUACUAUAAACACACAUAGUACCGUAUAAGCAUAUUAAAAGAUUUAUUGAAACCGUAUUGUUUUGAUAUUUUUGAAGUUGUCAUAGACAUCUCAUCAACAAUAGCCAAAUGCCUCGAAAAAAAAAGCGCCAAAUGCGAGCACCCGUAAAUGCAAUGCCUAGAUUUUGGUAAGUUAACUAAGGCUGUAUUCGGGAGGUGAGAUGGGGAACUCACCUCCUGUGCAUGCAAAAUAGAGCGACGCAUUUUCUUAUGAUUAAUUAAGUAUUUAUUUUUUAAAAAUUAUAUUAAUAUAAUUUUUAAAGCAGCUUUUAUAUAGAAAAUUUUUUAAAAAAACAUAUCAUAUUUAGCCGUUUGAAAAGCGUGCAUGUGGAACACGAGGGGUGUGAGUUGGGAAACUCACCGAAAAUAAUACAACCUAAUUACUCCUUGAAACAGCGAACCAUCAUUUUCAUUCGGUGGCGGAGCUAGACCCGGCUACCAUGGGCAAUGGCUCGGGCUCCGCCUGGCAAAUGCAGCUAUGCAUCCAUAGAUUAACACUUAAUUAGCUUGCUAAUUACAUUGCUUAGUUCACUACUAGGCCGUAUGAAGCAACACCACAUCGACAGAUGUGCUUAACACAAACUUAUAAAGCAAAUGCUCAUGUUAAAAUGAUCUAUGUAUUAUAUAGACUUGUAUAUUUUUUUUUUGUUUGCUAGGUUUGCUCGAGCUCAUAAAAUAUUUUGAAUCCGCCACUGUUUUAAUUAAAUAGAGGAGUAAAACUGUACAAGUGUACAAAGUGAAAAAGGAGAUAAUGUAAUGCUCAGGACCUUCAGUCCGAGCUUACUAAAACUCUAGACAACUGCCGAGAUGUAAUACCGUUGCUUAUAAUUCACCCGUAAAUGCAUUGGCUAGAUUUUGGUAAGUUAACUAAUUAUUACGAGUCUUAGUUUUUGUAAUACAGCCGCUUGUAAUUUACUGUUUGUAAUGCGAGUACACCAGUAUUUUUUUUUUAGCAAAACCGAUUUCUUUUACUUAUAUUUGAG

Sequence
(OSA-LNCN3460.3):

AAUAACUUCUGGCCCUAUAUCUUGAAAGGAAUGUUUAGGUACACAGCUCAAAAUUGCAAUAUAUUUUGGGACAGAGGUAGUAUACUUUUUUUCAGCUGUACUGAUGUCACUAAUCGCACAUAACGGAGGAUUGUUGUUGACUAGGGCAUCGGCAUGCUACACUUGAAAAAAGUACUAAUACGAAUCAUUGCCAUGGGUUAACAUUGAGGCGAUUACGCCACCCAAUUUGGUGAGAAGAUAGCAGGUGGAGGUUAGCAGGGCUGGGCAUCCCUUGCUUCAGGUCUUGCUGUCCAUUCAUGCUGCUAGGACAUUUACCACGUUGGUGCUUCAUAUGCAACAGCAUGGACCAAUUUACUAUGCCAUGUCCUAAGAAGGUUUGUGCAUGACAAGAAGGGCUAGAGAAUAUAUGCAUUAGUGUACUUGAAACAAAACAGGGUAGAGUGGCCCAAUGGCACUAUUUGUCUUUCCAAAUCGCCACUAUGUCAGUACAGAUAAACGAAUAGAGGAUGUAAAUGUUAACUCAAGUUACAUUUCAUGAACAUAUUUGGAUCUCUUUUUUGUCCACACGCAGCGUAGCGCGUGUCUAUUGCUAGUAGUAAUUAGACACAGAGUAGAUAUGUUCCAAAGGUGGUGAGAAUUAGGCCUUGUUUAGUUGAAGAAAAUUUUUAGGCUUGGUUGUCACAUCGGAUAUACGGAUACACAUUUAAAGUAUUAAGCGUAGUCUAAUAACAAAACAAAUUACAGAUACCGCCAGGAAAUGCGAGAUGAAUUUAUUAAGCCUAAUUAAUCUAUCAUUAGCAAAUGUUGACUGUAGCACCACAUUAUCAAAUCAUGGCGUAAUUAGGCUUAAAAGAUUCGUCUCGUAAUUUACACGCAAUCUAUGUAAUUGGUUUUUUUUCUACAUUUAAUACUCUAUACAUGUGUUUAAACAUUCGAUAUGAUUUCAUAAAAAAUUUUAUUUUCGGAAGUAAACAGGCCUUACUAAUGCUAGAUCGAUCUGACAGAGGCCGUUGACCAUUGAUUCAUUGAAUUAAUACUCCUAUCUCCAGGAGUGUGAAUACGGUGUGGUGUCCAGCCUCUGGAUCUGUCGGUAAGACAGUAAUUAGGAGUGCACUAGAAGCGCACUAGGUCAGUAAUAGCCCAAACCUAAACGGCUAGAAGUAUUGACGAGUUCGUCGCAUCUGCAUUGUCUAAUUUUUUUUUUCGAGACGACACGUGUUCUUACAUAAAUAUAUAUACGCUCAUUACUAUAAACACACAUAGUACCGUAUAAGCAUAUUAAAAGAUUUAUUGAAACCGUAUUGUUUUGAUAUUUUUGAAGUUGUCAUAGACAUCUCAUCAACAAUAGCCAAAUGCCUCGAAAAAAAAAGCGCCAAAUGCGAGCACCCGUAAAUGCAAUGCCUAGAUUUUGGUAAGUUAACUAAGGCUGUAUUCGGGAGGUGAGAUGGGGAACUCACCUCCUGUGCAUGCAAAAUAGAGCGACGCAUUUUCUUAUGAUUAAUUAAGUAUUUAUUUUUUAAAAAUUAUAUUAAUAUAAUUUUUAAAGCAGCUUUUAUAUAGAAAAUUUUUUAAAAAAACAUAUCAUAUUUAGCCGUUUGAAAAGCGUGCAUGUGGAACACGAGGGGUGUGAGUUGGGAAACUCACCGAAAAUAAUACAACCUAAUUACUCCUUGAAACAGCGAACCAUCAUUUUCAUUCGGUGGCGGAGCUAGACCCGGCUACCAUGGGCAAUGGCUCGGGCUCCGCCUGGCAAAUGCAGCUAUGCAUCCAUAGAUUAACACUUAAUUAGCUUGCUAAUUACAUUGCUUAGUUCACUACUAGGCCGUAUGAAGCAACACCACAUCGACAGAUGUGCUUAACACAAACUUAUAAAGCAAAUGCUCAUGUUAAAAUGAUCUAUGUAUUAUAUAGACUUGUAUAUUUUUUUUUUGUUUGCUAGGUUUGCUCGAGCUCAUAAAAUAUUUUGAAUCCGCCACUGUUUUAAUUAAAUAGAGGAGUAAAACUGUACAAGUGUACAAAGUGAAAAAGGAGAUAAUGUAAUGCUCAGGACCUUCAGUCCGAGCUUACUAAAACUCUAGACAACUGCCGAGAUGUAAUACCGUUGCUUAUAAUUCACCCGUAAAUGCAUUGGCUAGAUUUUGGUAAGUUAACUAAUUAUUACGAGUCUUAGUUUUUGUAAUACAGCCGCUUGUAAUUUACUGUUUGUAAUGCGAGUACACCAGUAUUUUUUUUUUAGCAAAACCGAUUUCUUUUACUUAUAUUUGAG

Sequence
(OSA-LNCN3460.4):

GUACACAGCUCAAAAUUGCAAUAUAUUUUGGGACAGAGGUAGUAUACUUUUUUUCAGCUGUACUGAUGUCACUAAUCGCACAUAACGGAGGAUUGUUGUUGACUAGGGCAUCGGCAUGCUACACUUGAAAAAAGCGAUUACGCCACCCAAUUUGGUGAGAAGAUAGCAGGUGGAGGUUAGCAGGGCUGGGCAUCCCUUGCUUCAGGUCUUGCUGUCCAUUCAUGCUGCUAGGACAUGCCAUAGUGUAUUGAUUCCUGUGCAUCGCUUCUUUCUGGAGUUCAGUUACCACGUUGGUGCUUCAUAUGCAACAGCAUGGACCAAUUUACUAUGCCAUGUCCUAAGAAGGUUUGUGCAUGACAAGAAGGGCUAGAGAAUAUAUGCAUUAGUGUACUUGAAACAAAACAGGGUAGAGUGGCCCAAUGGCACUAUUUGUCUUUCCAAAUCGCCACUAUGUCAGUACAGAUAAACGAAUAGAGGAUGUAAAUGUUAACUCAAGUUACAUUUCAUGAACAUAUUUGGAUCUCUUUUUUGUCCACACGCAGCGUAGCGCGUGUCUAUUGCUAGUAGUAAUUAGACACAGAGUAGAUAUGUUCCAAAGGUGGUGAGAAUUAGGCCUUGUUUAGUUGAAGAAAAUUUUUAGGCUUGGUUGUCACAUCGGAUAUACGGAUACACAUUUAAAGUAUUAAGCGUAGUCUAAUAACAAAACAAAUUACAGAUACCGCCAGGAAAUGCGAGAUGAAUUUAUUAAGCCUAAUUAAUCUAUCAUUAGCAAAUGUUGACUGUAGCACCACAUUAUCAAAUCAUGGCGUAAUUAGGCUUAAAAGAUUCGUCUCGUAAUUUACACGCAAUCUAUGUAAUUGGUUUUUUUUCUACAUUUAAUACUCUAUACAUGUGUUUAAACAUUCGAUAUGAUUUCAUAAAAAAUUUUAUUUUCGGAAGUAAACAGGCCUUACUAAUGCUAGAUCGAUCUGACAGAGGCCGUUGACCAUUGAUUCAUUGAAUUAAUACUCCUAUCUCCAGGAGUGUGAAUACGGUGUGGUGUCCAGCCUCUGGAUCUGUCGGUAAGACAGUAAUUAGGAGUGCACUAGAAGCGCACUAGGUCAGUAAUAGCCCAAACCUAAACGGCUAGAAGUAUUGACGAGUUCGUCGCAUCUGCAUUGUCUAAUUUUUUUUUUCGAGACGACACGUGUUCUUACAUAAAUAUAUAUACGCUCAUUACUAUAAACACACAUAGUACCGUAUAAGCAUAUUAAAAGAUUUAUUGAAACCGUAUUGUUUUGAUAUUUUUGAAGUUGUCAUAGACAUCUCAUCAACAAUAGCCAAAUGCCUCGAAAAAAAAAGCGCCAAAUGCGAGCACCCGUAAAUGCAAUGCCUAGAUUUUGGUAAGUUAACUAAGGCUGUAUUCGGGAGGUGAGAUGGGGAACUCACCUCCUGUGCAUGCAAAAUAGAGCGACGCAUUUUCUUAUGAUUAAUUAAGUAUUUAUUUUUUAAAAAUUAUAUUAAUAUAAUUUUUAAAGCAGCUUUUAUAUAGAAAAUUUUUUAAAAAAACAUAUCAUAUUUAGCCGUUUGAAAAGCGUGCAUGUGGAACACGAGGGGUGUGAGUUGGGAAACUCACCGAAAAUAAUACAACCUAAUUACUCCUUGAAACAGCGAACCAUCAUUUUCAUUCGGUGGCGGAGCUAGACCCGGCUACCAUGGGCAAUGGCUCGGGCUCCGCCUGGCAAAUGCAGCUAUGCAUCCAUAGAUUAACACUUAAUUAGCUUGCUAAUUACAUUGCUUAGUUCACUACUAGGCCGUAUGAAGCAACACCACAUCGACAGAUGUGCUUAACACAAACUUAUAAAGCAAAUGCUCAUGUUAAAAUGAUCUAUGUAUUAUAUAGACUUGUAUAUUUUUUUUUUGUUUGCUAGGUUUGCUCGAGCUCAUAAAAUAUUUUGAAUCCGCCACUGUUUUAAUUAAAUAGAGGAGUAAAACUGUACAAGUGUACAAAGUGAAAAAGGAGAUAAUGUAAUGCUCAGGACCUUCAGUCCGAGCUUACUAAAACUCUAGACAACUGCCGAGAUGUAAUACCGUUGCUUAUAAUUCACCCGUAAAUGCAUUGGCUAGAUUUUGGUAAGUUAACUAAUUAUUACGAGUCUUAGUUUUUGUAAUACAGCCGCUUGUAAUUUACUGUUUGUAAUGCGAGUACACCAGUAUUUUUUUUUUAGCAAAACCGAUUUCUUUUACUUAUAUUUGAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

221

LEP:

44.92%

ME_num:

252

MEP:

51.22%

HE_num:

18

HEP:

3.66%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

embryo

Tau :

0.81

Avg Expression:

4.17

Tip: OSA-LNCN3460 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN1.799624892314216.51806576273064e-08
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN1.328312963442190.000175277147020926
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1.471719619990671.57282947714366e-05
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN1.548434399860617.7797482529139e-05
5Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA1.21690632787520.00142437073637408
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN1.707337855738311.98904573035739e-08
7Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP73426.488328476752021.91360133308879e-15
8Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA1.364110767748190.000178014163949635