Chr:
Chr3
Start:
2254872
End:
2255535
Strand:
-
Ref_name:
OSA-LNCN3454
Sequence
(OSA-LNCN3454.1):
GUAGGCAGCUUGUGUUGAAGAUGCUGACGCCUAUUAGCGGUGACGGCGAUGUAGCCAACCGUGAAGAAGAUAGCAUCAGUUGGCGUCAGAACAGGCCAGCCGUGCUGGCGGUGACACUAGUCGUCGGCAGACGAGGCGGCCGGUCGGUGAAGACGUAGACGCCCAACAACGGCGGCAUAAUAGGCCAGCCGUGCAGGCGGAGACACCAGUCGGCGGCGGCGAAGGCAAGCCGAUGGUGAUGUUCUGACUGAUCAGUUCCUGAAGCGUAGGAGAUAAACUUAAAGCCAUGAAUCCCUUUUAUGCAUAUCUGUAUCUGGAUCCUACAGAACAAACAGAUAGGAUGAGUAGUAUCUGAUGUAAAUAUAAUACUCGAGAAAAAUUCAAGCAUUUUAAAAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
79.67%
ME_num:
MEP:
11.18%
HE_num:
HEP:
8.94%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.95
Avg Expression:
30.03
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -2.57295203751744 | 0.0356400908313905 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.09141587285232 | 0.0138136994854879 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -2.55786035455702 | 0.0218050207117032 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -3.02991802090777 | 0.042156289081952 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -2.73695608425942 | 0.0429578746414186 |