Chr:
Chr3
Start:
2102099
End:
2102629
Strand:
-
Ref_name:
OSA-LNCN3450
Sequence
(OSA-LNCN3450.1):
AAGGUCCCUCUGCUUCUCGCCUUCCUUUUUCUCUUGCCCGCCGCCUCCGCCGCCGCGUGAGCGUGUCCAUGGCGUCGAUGGGCAGCCAUCACCGUCUCCUCCCCACCGGAGCCACCGCCGCCCCUUGCCACCUUUCCUCAGUUGGAAACUCAAGAUCUCCCUUCAGCUUCUCCAUCCAUGCUCGUUGGCCCCAUGAGGCCAUGAGUAGGGAGGGGAUCAGGGCAUGCGACAGACGCCCGCCAUGGCCGCCGGAAAAGGGACAUCCUCUCCAACCUCUUCGAUGGGUGAUGGGCGCUGGCAUGUGCUUCGACUCCACACACGCUGCAACUGGUAAUUACCAAACAUUUUUCUAGAGCAGACCUUAGAUUAGCAUAUGCUAAUAUGUAGUUGAGUACAUACAUAAGAGAAAAAAAACUAGACUACUAGAGCUUGGG
Sequence
(OSA-LNCN3450.2):
AAGGUCCCUCUGCUUCUCGCCUUCCUUUUUCUCUUGCCCGCCGCCUCCGCCGCCGCGUGAGCGUGUCCAUGGCGUCGAUGGGCAGCCAUCACCGUCUCCUCCCCACCGGAGCCACCGCCGCCCCUUGCCACCUUUCCUCAGUUGGAAACUCAAGAUCUCCCUUCAGCUUCUCCAUCCAUGCUCGUUGGCCCCAUGAGGCCAUGAGUAGGGAGGGGAUCAGGGCAUGCGACAGACGCCCGCCAUGGCCGCCGGCGCGUGAGCAGAGAAGAAAAGGGACAUCCUCUCCAACCUCUUCGAUGGGUGAUGGGCGCUGGCAUGUGCUUCGACUCCACACACGCUGCAACUGGUAAUUACCAAACAUUUUUCUAGAGCAGACCUUAGAUUAGCAUAUGCUAAUAUGUAGUUGAGUACAUACAUAAGAGAAAAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
83.54%
ME_num:
MEP:
15.65%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.88
Avg Expression:
1.54
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.33425681991513 | 0.0169286172062129 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.601514013097 | 0.00573066787292558 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.95575021701497 | 0.045419649848981 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.87958730919657 | 0.0159288571260163 |