Chr:
Chr3
Start:
2039643
End:
2043786
Strand:
-
Ref_name:
OSA-LNCN3449
Sequence
(OSA-LNCN3449.2):
GUGCUGUGGCGUGUGUGGUCUGGUGUUGUGAUAAGUCGAUGAGAGAGCUUUUGUGAGUGACAGGGAGGAUUUGGGAGCUAGGAUAAGCUUGAUAAUUCAGCUGAAGGGAGACUGGGAGAAGGAAAUGAAAUGCAGCCACAUGAUUGCCUCAACUGCAUGUCUCUCCACCAGAUGAUACUACUCCAAUAUAGGUCAGUCGUCUGUAUACUGUAGCGCUACAGGGAGGCGUCCGCGUCAGUUCAGAUGAUCCGUGUCGUUGCCUUUAAUCCAUGUACUAUGACAGAAUAAACAGGAAGACUGUCAACGUUGAGAUAAAAUACUGAUACCAAGCUACUACAAUUGAAGGAAGGCGUACGUAAAAGAUUCUACUGCUAAUUGCUAGCACUCAAAAACUACAAUUUCUACCAACUCACAUCGUAACACAAUUCAAGAAGAGAAGAACUGCAAUCGUCUUUUUUUCACCACGAUGUUGAAUUUGAUAAUACAACUUUUGAUUCACCUUUCGAUUCUUUGAUGAAAGAAUCGAAAGGUCAACGUUGGACUCCAAGUUUGUUGCAUCAAGGCAAAGAAGAGAAGCGAAACAAGGUUUGUUCUCUCGUCUACCUUAUUUUUCUUCUGCGUUCUGAAGGGAAUCGGCAUUUGUCUUCCAGAAACAAAAUAGUGCUCGGGGGAAUCUUUUCAUAAAAAAAUAGGAGCAUGUUUUAUGCAUAAUUAAAAACGGCUAUCAUUGAGGCAAAUGAUGACAUUCGCGCAUGUAACCUCAUUAUUAUAGUAGUUGCAAGUGUCGGUUUGUUGUUUUCUAAUCAUCUAAUCUGUUCCUUUUUUACUUCGAGGGUGUACGUGCUUGAGCAACAAGGUUUGCCUAUCAGAUAUUCGAGCAAUCCAAAUCUCAAACGAACACAGUUAGAACACGAACGGAUAGGCCUGAAUGAGGGACCACAACACCAUUCGCCUACACCGCUACACGCACCAAGAUGAUAGAAUUCGUUUCCUAUUCGCACCUUCUUUUUUUUUUUCUUUCUUUUUUUGCCCUCGCGGAUGUCGAUGGUUUUUUGUACCAAAAUGUUUGCUGCUAACACUUGAAUGCAGCACCAAGAAAAAAAAAGAGGCUAUUAA
Sequence
(OSA-LNCN3449.1):
UGCACAUCCAAUCCUCGCCAAGUUUUUUUCAAAGGCAAGGGCCAAUAAUUUAGCCUUUUGGGAGAGCGUCACUUGUGGGCAGGUCCAAAUUAACAUUUCCAGGUUUGGCGGCUGCUUCCUCUUUCUGCUUGAACACUUGGGGAUAGAGAAUAGAUAACAAACUGGCUGGGUCAUGGGGGCUUCUUCUUCUUCCAUUUGCAGGGAGGAUUUGGGAGCUAGGAUAAGCUUGAUAAUUCAGCUGAAGGGAGACUGGGAGAAGGAAAUGAAAUGCAGCCACAUGAUUGCCUCAACUGCAUGUCUCUCCACCAGAUGAUACUACUCCAAUAUAGGUACUAUGACAGAAUAAACAGGAAGACUGUCAACGUUGAGAUAAAAUACUGAUACCAAGCUACUACAAUUGAAGGAAGGCGUACGUAAAAGAUUCUACUGCUAAUUGCUAGCACUCAAAAACUACAAUUUCUACCAACUCACAUCGUAACACAAUUCAAGAAGAGAAGAACUGCAAUCGUCUUUUUUUCACCACGAUGUUGAAUUUGAUAAUACAACUUUUGAUUCACCUUUCGAUUCUUUGAUGAAAGAAUCGAAAGGUCAACGUUGGACUCCAAGUUUGUUGCAUCAAGGCAAAGAAGAGAAGCGAAACAAGGUUUGUUCUCUCGUCUACCUUAUUUUUCUUCUGCGUUCUGAAGGGAAUCGGCAUUUGUCUUCCAGAAACAAAAUAGUGCUCGGGGGAAUCUUUUCAUAAAAAAAUAGGAGCAUGUUUUAUGCAUAAUUAAAAACGGCUAUCAUUGAGGCAAAUGAUGACAUUCGCGCAUGUAACCUCAUUAUUAUAGUAGUUGCAAGUGUCGGUUUGUUGUUUUCUAAUCAUCUAAUCUGUUCCUUUUUUACUUCGAGGGUGUACGUGCUUGAGCAACAAGGUUUGCCUAUCAGAUAUUCGAGCAAUCCAAAUCUCAAACGAACACAGUUAGAACACGAACGGAUAGGCCUGAAUGAGGGACCACAACACCAUUCGCCUACACCGCUACACGCACCAAGAUGAUAGAAUUCGUUUCCUAUUCGCACCUUCUUUUUUUUUUUCUUUCUUUUUUUGCCCUCGCGGAUGUCGAUGGUUUUUUGUACCAAAAUGUUUGCUGCUAACACUUGAAUGCAGCACCAAGAAAAAAAAAGAGGCUAUUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
87.6%
ME_num:
MEP:
12.2%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.90
Avg Expression:
0.81
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 2.35033326574029 | 0.023595883590974 |