OSA-LNCN3448


Function Link


Basic Info

Chr:

Chr3

Start:

1990281

End:

1996047

Strand:

-

Ref_name:

OSA-LNCN3448

Sequence
(OSA-LNCN3448.1):

GCUGGUCGCAGACUUUCAUUAGGCAUUCACAAAUCACAAAAAUAAUCACAUUCACAAUCAUUUGGACACAAAACAGAAUCACAAGAAACAUCACAAUCACAUUCAUCUGGCCAAAGAACAAAAUCACUUCACGUUCACAAUCAUUUGGACACAAAACAAAAUCACAAAAAUCAUUACCACCGCCAGAUCUGGCGGUUAGGGCCCGGAUCCGCCCAGGAGCUCUAGAUCCGUCGGGCGCUUGCAAGCUUGGGCCAGUGGAGGUGUGGGCGGUGGUAGAGGCGGCGGAGUCGGCGGAGCCCACGGUCGGAGGCGGAGUCGACGGAGCUUGAGGUCGGAGGCAGAGCCGGCGGAGGUCGGGGACGGAGUCAGCGGAGGUGGAGACCGCUGCAGCCAUCGGGCUGCCACCGCCUCCCCUCCCGCUGUCGGCCACCACCGCACCACGGCUCCAGAUCCGUCCGGCACCACCGCGCCUCCCCUCCCGCCCCUACCGGAUCUGGCGGAGGGGAGGGCGCCGCCGCCCCUCCCGCCGCCCCUUCCGCCCUUGCCUGGCCGCCGCUCACGCACACAGAGAGAGAGAGGGAGAGAGAGGGAGAGAAAUAGGGAAUGGGAUAGAGAACCGAUAAAAAUGGGGAAUGGGAGAGAGAUCGGCCUUAUCUCCUGUUGUGGGCCCCGCUAGGAGAAAAAAAAAUCUCCACCUCACCUCAAACGGGUUAGGGCUUAAACCCGUUUGAGGUGAGUAAACCUCACCACUUAUGGGCCUUCCGAUUGCAACCCGUCACAGGUAACUAGUCACCUGUGAUGGGCUGGAAUUGAAAACCCUUCACAGCCGGAUGGCUCACCGAUGACGGCAUCCCAUAGGACCCGUCAAAGGUGACCUUCAUCAGUGACCAGCACUUAUGCCCGUCACAGAUAUGCCGUCAAAGAUGUAAGGAUCUGGUAUAGUGUAGGAUUUGUGAAGUUUUACUUGUUUAGCAAUAUUUUUUUAGGGAAG

Sequence
(OSA-LNCN3448.2):

AUCAUUUGGACACAAAACAGAAUCACAAGAAACAUCACAAUCACAUUCAUCUGGCCAAAGAACAAAAUCACUUCACGUUCACAAUCAUUUGGACACAAAACAAAAUCACAAAAAUCAUUACCACCGCCAGAUCUGGCGGUUAGGGCCCGGAUCCGCCCAGGAGCUCUAGAUCCGUCGGGCGCUUGCAAGCUUGGGCCAGUGGAGGGGAGGGCGCCGCCGCCCCUCCCGCCGCCCCUUCCGCCCUUGCCUGGCCGCCGCUCACGCACACAGAGAGAGAGAGGGAGAGAGAGGGAGAGAAAUAGGGAAUGGGAUAGAGAACCGAUAAAAAUGGGGAAUGGGAGAGAGAUCGGCCUUAUCUCCUGUUGUGGGCCCCGCUAGGAGAAAAAAAAAUCUCCACCUCACCUCAAACGGGUUAGGGCUUAAACCCGUUUGAGGUGAGUAAACCUCACCACUUAUGGGCCUUCCGAUUGCAACCCGUCACAGGUAACUAGUCACCUGUGAUGGGCUGGAAUUGAAAACCCUUCACAGCCGGAUGGCUCACCGAUGACGGCAUCCCAUAGGACCCGUCAAAGGUGACCUUCAUCAGUGACCAGCACUUAUGCCCGUCACAGAUAUGCCGUCAAAGAUGUAAGGAUCUGGUAUAGUGUAGGAUUUGUGAAGUUUUACUUGUUUAGCAAUAUUUUUUUAGGGAAG


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

306

LEP:

62.2%

ME_num:

184

MEP:

37.4%

HE_num:

1

HEP:

0.2%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_apical_meristem

Tau :

0.68

Avg Expression:

1.76

Tip: OSA-LNCN3448 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN2.567969802990830.0297399544717381
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA2.392399251339170.0332247753990981
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN2.381854622173690.0278237233145551