Chr:
Chr3
Start:
1990281
End:
1996047
Strand:
-
Ref_name:
OSA-LNCN3448
Sequence
(OSA-LNCN3448.1):
GCUGGUCGCAGACUUUCAUUAGGCAUUCACAAAUCACAAAAAUAAUCACAUUCACAAUCAUUUGGACACAAAACAGAAUCACAAGAAACAUCACAAUCACAUUCAUCUGGCCAAAGAACAAAAUCACUUCACGUUCACAAUCAUUUGGACACAAAACAAAAUCACAAAAAUCAUUACCACCGCCAGAUCUGGCGGUUAGGGCCCGGAUCCGCCCAGGAGCUCUAGAUCCGUCGGGCGCUUGCAAGCUUGGGCCAGUGGAGGUGUGGGCGGUGGUAGAGGCGGCGGAGUCGGCGGAGCCCACGGUCGGAGGCGGAGUCGACGGAGCUUGAGGUCGGAGGCAGAGCCGGCGGAGGUCGGGGACGGAGUCAGCGGAGGUGGAGACCGCUGCAGCCAUCGGGCUGCCACCGCCUCCCCUCCCGCUGUCGGCCACCACCGCACCACGGCUCCAGAUCCGUCCGGCACCACCGCGCCUCCCCUCCCGCCCCUACCGGAUCUGGCGGAGGGGAGGGCGCCGCCGCCCCUCCCGCCGCCCCUUCCGCCCUUGCCUGGCCGCCGCUCACGCACACAGAGAGAGAGAGGGAGAGAGAGGGAGAGAAAUAGGGAAUGGGAUAGAGAACCGAUAAAAAUGGGGAAUGGGAGAGAGAUCGGCCUUAUCUCCUGUUGUGGGCCCCGCUAGGAGAAAAAAAAAUCUCCACCUCACCUCAAACGGGUUAGGGCUUAAACCCGUUUGAGGUGAGUAAACCUCACCACUUAUGGGCCUUCCGAUUGCAACCCGUCACAGGUAACUAGUCACCUGUGAUGGGCUGGAAUUGAAAACCCUUCACAGCCGGAUGGCUCACCGAUGACGGCAUCCCAUAGGACCCGUCAAAGGUGACCUUCAUCAGUGACCAGCACUUAUGCCCGUCACAGAUAUGCCGUCAAAGAUGUAAGGAUCUGGUAUAGUGUAGGAUUUGUGAAGUUUUACUUGUUUAGCAAUAUUUUUUUAGGGAAG
Sequence
(OSA-LNCN3448.2):
AUCAUUUGGACACAAAACAGAAUCACAAGAAACAUCACAAUCACAUUCAUCUGGCCAAAGAACAAAAUCACUUCACGUUCACAAUCAUUUGGACACAAAACAAAAUCACAAAAAUCAUUACCACCGCCAGAUCUGGCGGUUAGGGCCCGGAUCCGCCCAGGAGCUCUAGAUCCGUCGGGCGCUUGCAAGCUUGGGCCAGUGGAGGGGAGGGCGCCGCCGCCCCUCCCGCCGCCCCUUCCGCCCUUGCCUGGCCGCCGCUCACGCACACAGAGAGAGAGAGGGAGAGAGAGGGAGAGAAAUAGGGAAUGGGAUAGAGAACCGAUAAAAAUGGGGAAUGGGAGAGAGAUCGGCCUUAUCUCCUGUUGUGGGCCCCGCUAGGAGAAAAAAAAAUCUCCACCUCACCUCAAACGGGUUAGGGCUUAAACCCGUUUGAGGUGAGUAAACCUCACCACUUAUGGGCCUUCCGAUUGCAACCCGUCACAGGUAACUAGUCACCUGUGAUGGGCUGGAAUUGAAAACCCUUCACAGCCGGAUGGCUCACCGAUGACGGCAUCCCAUAGGACCCGUCAAAGGUGACCUUCAUCAGUGACCAGCACUUAUGCCCGUCACAGAUAUGCCGUCAAAGAUGUAAGGAUCUGGUAUAGUGUAGGAUUUGUGAAGUUUUACUUGUUUAGCAAUAUUUUUUUAGGGAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
62.2%
ME_num:
MEP:
37.4%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.68
Avg Expression:
1.76
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.56796980299083 | 0.0297399544717381 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.39239925133917 | 0.0332247753990981 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.38185462217369 | 0.0278237233145551 |