Chr:
Chr3
Start:
1482540
End:
1485643
Strand:
-
Ref_name:
OSA-LNCN3442
Sequence
(OSA-LNCN3442.1):
CUGCAUCAUCGUCAUCAUCAGUUCGUUUCACGUCGCGAUUAGCAAGUCGAUCUCAGAAUUGCCGGCAUUAAACCAGACGCUGCGCACGCUAUCUGGUCCACGAAUUCAGUGAGACAAGGACGCGUCCCCUUGUCCCGACUCAUGUGGUUGCGUGGUAACCAUCUAUCCGUUUGUACGACACUCGCUUCCCUUGCUUUCUCCAUCGGAGUAGGUCGUCGCAUUUACAGUAACUCGUACUACUCGUGUAAAACAGUAAUCUGUAGCAUGUACUACUGGAUAUACCAAACAGUAACAGGUGGAAUGAUGUGGGGAACGUACAAGCAGUCAAGCAGGUUGAUCUUCGUUUUACAGAUUGCGCGGAUCAGCAGGCGGCAUCUAGAGUAAAACUGUCCUUGAUGGUCCGGCUGAUCCACUAGCUUCUCUCUUGAUGGCCCACUCGAUAAUUAUGAGGAAACGUUGUCCUUAGAGCUCUUUAGCUCUCAACGCCGUUUUACGAAUUCCUUGAGACCUAUGAAGGAAACAGAAGAACAAUGAGCAUGGUAUGAUGUAGGCCACCAACAACUGUUUCACAUUCAAGGGGAAAAUACAACCUAAAUCUUUACAGGUGAACUACGCGAAGGUGCUUGAGAAGCAGGCGAUCUUUCAGGAGAAAUUAUUGUCGGCAAAGUCCCAGGAGACUGAGGAUUGUUUGAAGCAGGGGAACG
Sequence
(OSA-LNCN3442.2):
UGUUCAUAUACAACAGGGUAAAACCGUAAAAGUAUAGAAGGAGCGAACUGCGAUCACCGAGGGUCGUCGGAUCGAGAACCACGUCUCGGAUCUGUCACUUAUAUACACACUCUCCGUCCUAAGAAAAAAAAAAGCAACCUAGGAGAGAUCACCGUUAUACUAGGAGAGGUAAAACUGUCCUUGAUGGUCCGGCUGAUCCACUAGCUUCUCUCUUGAUGGCCCACUCGAUAAUUAUGAGGUUUGCCCUUUGCAAUCUUAUGAUCUGAUCUCAUUAUGUAACUUUGACUUUAGUCACAAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
11.38%
ME_num:
MEP:
56.71%
HE_num:
HEP:
31.71%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.81
Avg Expression:
18.74
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.08864030295716 | 4.86129017520283e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.12653359926121 | 7.02467545568338e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.29140330574634 | 0.00344335624666842 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 1.17447965234674 | 0.00389227773486364 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.10379893539656 | 0.00658486763760863 |
| 6 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -1.20681732964207 | 0.00089574549263391 |
| 7 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.1662362653219 | 0.011758246942835 |
| 8 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -1.48833937046319 | 0.0036222847784696 |
| 9 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -1.48694390536796 | 0.000975127152700626 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.04638292077355 | 7.45823631540073e-11 |