Chr:
Chr3
Start:
1250016
End:
1253035
Strand:
+
Ref_name:
OSA-LNCN3438
Sequence
(OSA-LNCN3438.1):
AUUCGACCUACGUAUUUGACUCCCAAGCAAAGCCUCUCUAUUCGAUUCUUAUGUUUUAUAUACGUGUUCAAUGAGAGAAUUGGAUGAUCAUUUGCAUGAACAUGCACGCAAACCCGAUCGAGGUCCUGCACUGCAUGCGAAAGUUUGCAAGUUCUCAUGCCCGAUAGGACGGUGGCGGAUGGUGGUGGGAACGGCUGAGAUUUUUGCCGGCCGGAUGCGGGGACAACGACAGCAACUCCUCCUCAUCCACCUGCGAUGGGAUAGCAGCAAACGCUGCUGUGUGCUGUGUGGGGACGAGAAGGAAAUGGCUGCAGCGCGGUGACCAGGAUGUUUAAAUGCGAUGUUUCUUCUGCCAGUUUCCAGGAAGCUACUCCUACAGACUACCGUGAUGCGGUGAUGCUUAUAAGUGUCCCUAGGGCUAUAUUAAGUACUCAUCCAUUCUAAAAUACUACUACUUGUUUCAUCCGUCUAAAAUAUUAUAUAUUUAAAUCGAUAGUAUUAGAAUGUGUCUAACGUUGUACUGACUUGUUACAUUUUAAAUGAAGACAGUAGUCAAGUACAAUGUCAAUCAGAAUGCUGAAUAAUAAUAGUGGGCUGUGCAGCUAGCCAUAUAGUAUUGAUUCGGACCGUCUUAUUUGAUUUUUUUAAAAAAAAAUUAAAAAAAAUAUAAGUCACGCAUAAAUUAUUAUUCAUGUUUUAUGUUUUAUAUUAGUAACAAUAAAAAUACUAACCAUAAAAUUUUUUGGAAAAGACGGACGAUCAAGUUGGACAUGAAAACUUAUGACUAUACUUAUUUUGGAACGGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
74.8%
ME_num:
MEP:
24.8%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.92
Avg Expression:
1.28
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.77890583769696 | 0.00260267531511245 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.74817376282988 | 0.00568149727825255 |
| 3 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.37342880169216 | 0.0362439641600672 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 5.82533155345081 | 5.11483064380729e-05 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 3.85261138733954 | 0.00267742955925176 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 2.14708646049553 | 0.0188810293628772 |
| 7 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.53180935000527 | 0.00141307064744968 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.33745742395745 | 0.0121055764956015 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.93973488939065 | 0.0164687994091686 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 2.15941173446966 | 0.0421637472447341 |