RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN3428

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr3

Start:

508799

End:

512101

Strand:

-

Ref_name:

OSA-LNCN3428

Sequence
(OSA-LNCN3428.1):

GUUUAUAUAAAGAAAGGAUGUCUGGGGCCGGGCGACCUAUCUUGCAACAGCGCUAGCUGCCUGAAUGGAGAAUGGACAGUAACAGUGUAGUGCUAGCUAGCUUGUGCUUGAUGAUGAAACACACGUCCCAUUCGCCUCUGCUGCUCGUUGCCUGUAAAUUAAAUACAACAACUUGACGCCUAAUUAGCAACAAGCUACGUAAGUAGUGGUGUUCACCUUUUCAUUCUUGUAGUUAAAUACUACUAGCAUCUACUUGUUUGUUUUGGUC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

12

LEP:

2.44%

ME_num:

265

MEP:

53.86%

HE_num:

214

HEP:

43.5%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_apical_meristem

Tau :

0.89

Avg Expression:

51.08

Tip: OSA-LNCN3428 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-2.667860151825660.0418071125885107