RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN3425

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr3

Start:

502250

End:

503122

Strand:

.

Ref_name:

OSA-LNCN3425

Sequence
(OSA-LNCN3425.1):

CCGGCCUUGAUAUUGUAGUCUAAUAGAGCUCCAAAAGUAGCUGCUCAAUAGAGGAGAGCAGUGGAGUGGUAACAACGCACGGUGACUCCUCCUUCCUGCUCGUUCAGCCCCUUUAAUUCCUCCAUCCAUUUCGACGGCUCCGGUCAUCAGCGAUUUGGGGAAGAGGGUCCAAGUAGUCGGGUUCUUUCUGUAGUAGGGGUUUUCCCUUUGUCUUCUCUUUUCUUUUGAUGUUUUUGUGUAGUGCAAAAGUUCGCAUGCGACACAUUUCUGUUAUCCCGGUGGCUUGCUAUGGAUUCCGGCUAAAUCCAUCCAUGGAAUGGUCUUCAGAUUUACCAUGAACGCCUCCAACUAUAAGUAAGGCAGGUAUGUUUUAUACAAAGUUGCUCCGACUAUCCUGUUCAUCUCCAAUAAGGCAAUCACAGCGAUGCAUCAUCCAUCAUCGGUGGUGGAUCUUCAGCGAGAAGCUACGUUGUUACUGUUUUUCAUAGAAGCCGCAACCUCCAAACGGAGGCCCCUUUUGGAUAUGCUUCCUGUUACUUUUAUCUGUAGUUACUCUUUGUUUUAUGCGUCACCGUUGCAUCCAGCUUAUCACCUGGUGGAGAAGAAAGGACUUGAUUGCUUUUUCUAGUUUAUUAGAAGUUCUUCGUCCUAGUUUCAAGAGCUUAUGUUAAUUUUGUUAUCUUCAAGGGGUCUGUUUGCAAAACUGUUUAUACUUACAAUUUCUUGCGGUCCCCACGGGGGAUAACUCGUGCGAUAUGUAUCUAGUUAUCUAUAUUCAAUAAAAUGCAUGAGUUUAGAGAGAGAGAGGGGGGGAGUGGAUUUCAGGUGAUCUAAGCCAUUGAUUGAUUUUAAUGGAUCAGAUUAAGCAGGUUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

379

LEP:

77.03%

ME_num:

112

MEP:

22.76%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.82

Avg Expression:

1.29

Tip: OSA-LNCN3425 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN3.876392048307781.41694212393424e-05
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN3.942912055898853.14236679956832e-05
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN2.520640285447330.0159686681390338
4Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day4.246129576890.0299258225181794
5Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae-2.20913607891170.000427290358654393