RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN3417

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

34108877

End:

34110372

Strand:

+

Ref_name:

OSA-LNCN3417

Sequence
(OSA-LNCN3417.1):

AAAAUAUAUCUAUACUAAUAUAAAAAGGAGGAGUUUUGCCUAGCAAUCCUAUGGUGAAAUCACAUGCACCCAGGCCCACGCGUCAUAUCCCUAUUUCUAAAUUUAGACAAACCCAUAUGCAAGCAAGUAUUUAGGCAAAAAAACUAUUAUAUGUUUUGAGAAAAUUCCUGCAGGUAAGAUGAAAAUUAGAAAACUGCAUGCACUUUAUGAAAUUUGUGCGGUUUGUGUCAUUGGGGAUUGAUUUUGCUUUCCCCGCAAGAAGAAAAAGCACUAAACACAUUGUAUUUAGAGAGAUUUUAGUUCUUCUAUGAUGGUUCUGUUGCUUUCGAGGGAUAUGAUGAGCUCAUUACUGCACUGCUAUUUUGUAUGGUAGUUUUGCACUUCGCAUUUGAGGAUGUUAGUAUAGAUAUAUCCUGAAACAUGUCAUGCGUUUUCAGCUUCAUGAAAAUAUGAAAAUUUGCAUAGCUGAAAAUCUGCAUGUGUUGCUUCAUGAUGUACCUGCAGGAGCUUUUACUUUUGUAUAAUUCACAAGGUUGCAUAGCUGAAAAUCUGCAGUCUGAACAUUUCUUCUUCAAAUGACAUCCCAUAAUUAAAUGUCAAACUGCUUCUUUCCGGCUUAUGUAUUUUCUUAGUUUGCAUGGUGAACAAUCUGUUCUGAUUUUUUUAUGCUUGCAUAUUCUGUAAAUUGGCAUUCAAGCAGCCAACAAGCAUCUGAAGGUAUCUGAUAUACAGAGCUCAGUUGUGUGGUCUAUCAAUACUGAUGUUCUCUAUCGAAUUUGUUUUGAUCCUUGGAAAGAUAAUAUGCCUAGCACAUUGUCUUCCUGAGUUUGUGUACACAUUGUGAACUUAUAUAUAGCUACAAACUUACCGCAUGUAUAAUUAAAAUCAGCAGCAAUGUCCAUUAAUCCAUACAUGAAUAUAUCUCUCUGGCUUGGAUGUACAAAGAUCAUGUCCUCUCUCUCUCUCUUUGUCUAUAGGUGGAGUGAGCUUCUCUUUGAAUCUGUGGUGCUUCAUUUUACUUAUAUUUUAUAAAAGGAGAUGUGCUGAGAUUCAAUUCCAUGUUGCUCUUUGCUUCAAGGUCAUUAGCAUUUUUUUCCAGCCCAUUAAAUGUUGUGAUUACAUGUCUGUUGCUGAAAUGUUAUGUAGGCUGUAAUAGGGUUUUGGAUGUAUCGUGUUGCCUUUGUGACUUGCCCUUUGAAAGUACAUAGAUGUACAUAAAUGGAUCAAUUUAUAUUGUAAGUUUUAUUCAGAUUGGACCUACAUUGUUUUCCUACCAAUUUGACGCAUGAUUGAGUUUUCAGGUCAGGUACACCAUUGAGCUCCCUUGAAUUGUGCUGAUUACCAAGCUUCCUGAGAUACGCAAUCUGCUCAUUGUACAAAACUUCUUCCUACAACAUACUUUGUCAAUUUUCCUUGGAGUGUCAUAUAAUCCUCCAUGUCAAUUACCUUACCCAUAACUACUGCAUUAAUUUUCAAUUUUGUUGCUAACUGCAGCUCAAUACGCAUAUAUGUUUAAGCACCAUCUGAAUAUUGGAAAUAACAUGGAACCACAAUUUGUGUAGAUGUAAAAUUUUCAGCAUUAGUAAAUGGUGCUACAGAUUUUGCCUUUGAUGGACUAUUGGCGCUGGAUGUAUUUGCUUUUCAUCAAAUAAAGCUCUUGUUUCUUAAUUUGCUGAUGGCACAAUUUUUUUUCUUGGCAGGAGCUCUGCAAAGCAUUUUCAUUUCUCAUUGGUCAUUUAUGCAAACCAAUAUAUCUUUCCCAAGUUUUAGAAGCUUCUGGAGAUAUAUAUUAUUGUGAGGGAAUAAUAAUGUUGCUCAUGUUAGCAGCUGAGAACUCUGCCAUCUGAAUUAAAAUAUAACCCAUGAUAAAUAGUGAGAAUCUAUUCUCAAAUAUUUACAUCCCACGCUCUUUUUAUCCUGAAUUAUGAAGCCCUGUAUAUACACGUGCAAGACAUUUUCCUAUCCAAGACGAUGUUGCUGAAACUAUAAAUGUUCAUAAAUGUUCAGAAAGGAAAAAACCUUUUAGCGCAGGUAUAGAGCACUAUCUUGAGAGAAAAAAAUACAAGAAAUAUUCAGAAUCUCUUUUUACAUAGCAUUUGUGUGGCUUCUAUGGGUCAGCUUUAUUGUAGGUUGGUUUCCUUAAAGUCAAUUUAUUAUGUUUAUUUGUGUAGAUUUAGCAUCAAAAUUAAAAAUGUCACUAGCAAGAUAAUGUUGAAAUCUUGUGGUAUAGAUUAUAUACAACUGAUCUGACAGGUUUGGUGCUAUAUGAUUAUUGCUCUUCAGUUUAAUUUGUGUGUUCCCCAGAAAAUAUUAGUAAUUAAUUAUGUUAAAUGCAUCAUUCUAGAAAGAAUAUAAUGUUUUUUUAUUAUAGUGAUAGAGAUUGCCAAUACUUUCUGCCAAUAAUUCUUUUUGCUUUCUCUCCCAUUGUAUUGGCGUUUUUCAGGAUGUCCAUACUGGACAGCAAUGUCAACAAGUCACUAGGUGAAUAGGCAUAUACUGACAUUCAUAACCAGGUGACCAAGGACGUUAUAACGUAUAUUGUGGACUCAGUUUUUCUAAUUAGAAACUUUACACGAGUUAUUUGAAUGUCAAAUAGGCAUACAUCUGUUGCUUGAGGUUUCCAAACAUUUAUCAAGCUAUGACAAAUUGUAUAUUUGGUACGAUUGGUGGUUCUUUUACAUAGUUAGUGUAAUGGGAGAGAUAUGCGGCAUAUUAAAAUUCGUAUUCCUAUGCCCCGUUUAAUAUGCAUGGUGGAAAACACAAUAAACUCAUAUAUAGUAGUAGAGAAAUGUAGAGGGAUGGGCAUGGCAAUGA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

475

LEP:

96.54%

ME_num:

12

MEP:

2.44%

HE_num:

4

HEP:

0.81%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

panicle

Tau :

0.99

Avg Expression:

1.17

Tip: OSA-LNCN3417 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: OSA-LNCN3417 is not a differential expression ncRNA.