Chr:
Chr2
Start:
34071007
End:
34075671
Strand:
+
Ref_name:
OSA-LNCN3415
Sequence
(OSA-LNCN3415.1):
CGUCCAUACCCUUGCUCAUUUGAGCUUACAUUCUUUUUUUUUCUUUUUUCCUGAAACUCAAUAGUUUAUUCAAUCCAACUUCUUGUGCACCGCCGGAGAGCUAAAAAGAGUGAUUAGAUUUUAAGUUAUUAUGCUAAUCAAAUAUUAACAGAAAGAUAUAAAUCUCGCAUCUGUUGCAUCGCUCAAAACAAGAUCCAUUUACUAACCGCUCUCUGCAAACAAAGUACUUUGCAUAAUUGCAUAUACACCCAGAACAAUUAAACAAGCUAGAAAAAAAAGGUGCGAAGAGAAAAAAUAUCCCCAAAUCCAGGCCUACAAUUAUCUAAAAAAAAUCCAAGCCUACAGCAAAACUGCAGACCAUUCUUCCAGAUCAUUGCUUGCUUCAAUCAACAGCGGCUGGAUCUUGCGUAGCUCCAUUCCUCCGCUCCAAGAACGGCCACAGCCGACGCUGCCGCUUCCUCCUUCAGCGCGCCGACGCCACCGCUCCCCAGCGCACGGCCGCUGCCGCCGCCGCCGCUCCCUACGCCACCAGCGACGAAAGUUGGGACUGGUCCGACUGGAUGAGUAGGUGGGGAUUGGGAUGGUUGAUUAGGAAUUGGGGGUAUUUUGGUCUCUCUGGGGUUCUAAAUUUAUUUUUUUCUAGAUGAAGUCCUAACGAUUGAGUGGAAACGAGAUUAGACGGCAACUUUGAUUUUGAAAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
75.2%
ME_num:
MEP:
10.37%
HE_num:
HEP:
14.23%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.90
Avg Expression:
50.23
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.58792927665311 | 0.0219537057346298 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.33153801878064 | 0.0319569169601261 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.39259606860653 | 0.0226412289564172 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.55561431878169 | 0.0285033873105118 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.89428103359229 | 0.00122461585725215 |