Chr:
Chr2
Start:
35586556
End:
35587145
Strand:
-
Ref_name:
OSA-LNCN3405
Sequence
(OSA-LNCN3405.1):
UUGAUGCCAUGGUAACCGUCUUGCUAUGUAUGUGUACACCAAUUUUAAUACACGAAAAUCCACACAUUUUCAACCAAUCCGAAUCUUCGGAAAUGCAUCUAGGCAAUUUAAAUUCAAAUUUUGACCAAAUCCUUACUAAAUUACGUAGAAAAUGCUUAUUUUUGGAAGAGGGCAGCUACCGUACGAGAUUCCGUUGCAACGUAGCAGCCACGGGAUAAGAUCUCCACUACCUUGUCUCCUUCCCUUUCCCUCCACAAACUCUCUCACACAGGAGAAGAAAACGAGAGGCGGAGAUGAAGUUGGCCAGGAGGAAGGGGUCGUCGUCGUCUCCGGCGGCCGUGGAUGACGACGGCACGGCGUCGGCGAGGUCGCCGUCGUCCUUGCCCGCUGCUCCCGCCGCCUCCUUGCCGGUGAGCGUAGGUGGCUCCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
8.54%
ME_num:
MEP:
19.31%
HE_num:
HEP:
71.95%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.68
Avg Expression:
42.48
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.80309893473596 | 3.32697792702197e-11 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.19620649548496 | 2.44817957993676e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.95513035585335 | 2.98685490732396e-11 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.27614367896327 | 2.14667509472082e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.457059745096 | 9.88618722568487e-11 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.05812540115708 | 0.0080054527649866 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.37316082109768 | 3.62321602368527e-09 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.5354314830253 | 4.60453787847353e-10 |
| 9 | 9311 // leaf // control--/--9311 // leaf // salt | 5.0351073539655 | 0.00198965362348772 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.38341114151841 | 2.61944344597539e-17 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.01831432166756 | 1.45604474198881e-08 |
| 12 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.41088236923573 | 1.1214088644017e-17 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.76441639642469 | 6.17174620675349e-11 |
| 14 | 9L136 // leaf // control--/--9L136 // leaf // salt | 3.10718760344691 | 7.71674110347774e-06 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.50795340141794 | 1.58822682236421e-07 |