Chr:
Chr2
Start:
35090963
End:
35102112
Strand:
-
Ref_name:
OSA-LNCN3395
Sequence
(OSA-LNCN3395.1):
GCCACCAAAUGGCAAGUAACUGAGAAUUCAACAGAACACGUGAGUCCCAUUUAGCUAUGUAGAUUCAUCAAAUAUAUUAAAUUAGCCAGUGAGGCAGUGACAGCUAACAGAUGCUAGCCGCAAUACACAGAAUGAAAGCUACCACAGCCUAAAAUUGGAGCUUAAAAAGUUUGACAUGCCAACUGAAAAUCAAUAAUUUGGAUGUUGUCUUGAAAGAAAGAUGUGUUCCGCAGUGAGUUCAAUCUAAGCUGACAAAAUAAUGGGACAUGUCAUGUGCCAAGUAAAUGCAGAUUACCAUUUUUAAGUUUCAGUGUGAUGCCUAGGAGACUUGCUGUACAUUAUAGUUGAUGAUACGUUGGUUGUUUUUCAAUUAACAUGAUUUGCAGGUCACAGGUUUUAUGCCGUGCAUCAACUCCCUGCAAGACUGCAACACGGAAGAAGUUUGUAGUCCAGUCGGAAGUCUUCAUUAACUCAGGAUGGCACGAAUUGUUACGUCUUCUAAUCAAGUAAGGAUUUUGUUCAAAGCACCUCUGAUGUUUGUUGAUCCAUACAAAGGGUUCUGCUGUUGACAUACUUGCUACAGCUACGGAACAUAUUGAUACCUUAGAUAGAAGAUAAAAUGUCCAUGUCAAGACUGCUGCAGAGGUCUCAUGGCCA
Sequence
(OSA-LNCN3395.2):
ACAGAAUGAAAGCUACCACAGCCUAAAAUUGGAGCUUAAAAAGUUUGACAUGCCAACUGAAAAUCAAUAAUUUGGAUGUUGUCUUGAAAGAAAGAUGUGUUCCGCAGUGAGUUCAAUCUAAGCUGACAAAAUAAUGGGACAUGUCAUGUGCCAAGUAAAUGCAGAUUACCAUUUUUAAGUUUCAGUGUGAUGCCUAGGAGACUUGCUGUACAUUAUAGUUGAUGAUACGUUGGUUGUUUUUCAAUUAACAUGAUUUGCAGGUCACAGGUUUUAUGCCGUGCAUCAACUCCCUGCAAGACUGCAACACGGAAGAAGUUUGUAGUCCAGUCGGAAGUCUUCAUUAACUCAGGAUGGCACGAAUUGUUACGUCUUCUAAUCAAGUAAGGAUUUUGUUCAAAGCACCUCUGAUGUUUGUUGAUCCAUACAAAGGGUUCUGCUGUUGACAUACUUGCUACAGUCAACAGGACUACAGGAGAGAUUUCCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
2.64%
ME_num:
MEP:
41.26%
HE_num:
HEP:
55.89%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.86
Avg Expression:
40.87
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.40876441700805 | 5.21185231645357e-08 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.09231449503295 | 5.36139092158826e-05 |
| 3 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -1.06972533382729 | 0.0383369871024998 |
| 4 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -1.24716647485642 | 0.0434337711974282 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.01714848827491 | 0.00385245662394495 |
| 6 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -3.01097221282116 | 7.93254813377401e-10 |
| 7 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -3.01108696825181 | 8.26016803766909e-10 |
| 8 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -3.01119131736159 | 8.06053144292439e-10 |
| 9 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.45321463448849 | 1.79110613962725e-18 |
| 10 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.4999139491896 | 2.21147613281439e-23 |
| 11 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.77059484290554 | 1.0751107155341e-07 |
| 12 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.75283511338441 | 0.00208222176422213 |
| 13 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.79400247778856 | 9.72707806926995e-09 |