Chr:
Chr2
Start:
34902227
End:
34902819
Strand:
-
Ref_name:
OSA-LNCN3390
Sequence
(OSA-LNCN3390.1):
GCCCCUGCUGGAUCAGAUCAUCGGCAAAACUAUCGAACAGUAAGCUAAAAUAGCUAUUAGGCUCUGUUUAGAUCUCCUGGCAAAAUUAUUCACCCUGUCACAUUGAAUGUUUGGACACAUGUAUAGAGUAUUAAAUAUAAACGAAAAAAUAAUUAAUUACACAGAUUGCGUGUAAAUUGUGAGACAAAUCUUUUAAACCUAAUUGCUCCAUGAUUUGACAAUGUGUUGCUAUAGUAAACAUUUGCUAAUGACGAAUUAAUUAGGCUUAAUAAAUUCGUCUCGCAGUUUACAGGCGGAUUCUAUAAUUUGUUUUGUUAUUAGUCUACGUUUAAUAUUUCAAAUGUGUGUCCGUAUAUCCGAUGUGACACGCCAAAACUUUACACCUUUUUGAUCUAAACACAGCCUUAGCAGGGUUGGAAAUUUCAGACCAAAAUUUCGGUCCCCUCCGAUACGAUAUUAAUUUGGCCGAAAUUUUUAAAUUUUUUCAUGAAUUUGGGUAAUAUUUAUUCAAAUUCAACUAAAUUUUGUUCAAAAUUUUGGAAAUUUCGGACCGAAAUUUCGGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
25.2%
ME_num:
MEP:
44.92%
HE_num:
HEP:
29.67%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.65
Avg Expression:
6.00
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 5.01445253485387 | 1.03635338908399e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.50047605341567 | 0.00615559636262931 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 6.18870599875256 | 2.25963350247205e-09 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 5.19989633042493 | 2.09361905076489e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 5.63057814520575 | 2.22010073045035e-07 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 5.27841307253173 | 2.19877629158098e-06 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 5.05176472601286 | 4.22925609984692e-06 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -2.26091045670391 | 7.60386152986107e-05 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.65361626916533 | 0.000996037680284683 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 5.64366511912128 | 8.29851413997318e-08 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 5.43739357274595 | 2.79029931933319e-07 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.54486656457389 | 0.00603919973087607 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -2.64014991644948 | 1.45045456191103e-09 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.50932830271552 | 0.00423143685826907 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.90479180688332 | 1.7206167615106e-05 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.45825809343204 | 0.0335549624416504 |
| 17 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -2.97737953895941 | 0.0124682073926912 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.94648241206554 | 0.00103159511994069 |
| 19 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -2.97751629237448 | 0.0126006209790042 |
| 20 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -2.97753293414369 | 0.0125008398595246 |
| 21 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.5501804558257 | 0.000156556627326895 |
| 22 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | -1.65500004563366 | 0.00765509370570137 |
| 23 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 5.61015470894838 | 2.39194853077248e-07 |
| 24 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.18328106778078 | 0.0193927910783536 |
| 25 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 4.56917854826305 | 3.99758503446182e-05 |