OSA-LNCN3367


Function Link


Basic Info

Chr:

Chr2

Start:

33509905

End:

33511938

Strand:

+

Ref_name:

OSA-LNCN3367

Sequence
(OSA-LNCN3367.1):

AAACAGGUUAGAGACUGUUUAUUGUGCUGGUAAGCUACUAAACCAACUUUUGAUGAUAUGGUGAAAAUUGCAGCCAACUGUGGGCGUUACUAUUAAUCUUGCUUUAAAAGGUACUGAUCAUGGAGCUCAGGAGCUGAGUGUUCUUGUCAUGUAAUGCCAGUAAUCCUUUUUUUUUUUGCCUUUAUCUUUUCUUUUAGACGAACUAGAGGGCGUGCGUAAUUAUUGGAGAAAGGUGAAAAGUGAAUCGAACCAAGCAAGCAUGAUUUCUUCCUUGUAAGCAUCAAUAAUUCAAAGGAGGCUAGUAGCGUGGUUUAUACACGCAUAAUUCACUAGGCUUUUCAUGUCUUUUUAAGGGGCGUAGUAAGCUUUUUUUUGCUCUUCUUUUCUUCCCCUCUUCUUCACUCCUCGGUGGAUGGCACUUUGGUGGUGAGAAAUCAUCAUACCGAUUCAAUUCAUUCAUGUCAUGAGAUGCAAGCAAAGUUUGGUGCUAUAGCUUUCCCCUUAGCUUCUCCCCAUCCCUCCUCUUUAGCCCAUAGGGAGAAAGGAAGAGGGAAAGCGGCUAGCAUGUCACUUUUCGCUUGCUUAAGUUACCAUGCAUCUCCCACAACUCAAAGUAGACCAUCAUGAGGAAUGAUUUGUGUGCCUGCCUCCCCUGCUCGUGUAUGUAUCAAUCCUUAGCUUGAAGAAACAAAGUUGGUGCAAAGUAAAAGCGUAAAUCGCAUCAUAGUCCACCCACCCACCUAAAGUUGCACCUUUUAACCAGCAUGAUUAGCUCUAUCAAGCCUUUAAUCAGGCAGUACUUUUUUUAUAUAUUUUAGUGAAGCAGUGUUUAACCAUGGGUGGCAUGAGUGAAACAGUCCAGCUCAGGAAUAAAUACACACACACACAAAACCAAUUGAAAAUGGUUAGCAACAACAAAGUUGGCAAGCUUUAUAAUUGUGCUUUGAGAGCCUCAUCUCAUCCCCUUUAUAAUCUCUCUCUCCAUGGGAAGCAAAGUAAGGUGUGAAGGCACCUGAGAGGAGAGAGCUUGACAAAGAGCAUCAUGCAUGAUGCCCAACUAGGCCCACAGUAUGGAUGGUGAGGGCGUGUAGCAAAAAAGAAGGCAUAACCUUUUUGGGUGAAAAAGAAGAAAAGGUCAGGGAGUUUGAGACACCAAUGAAAGGAAGAGAAAGGAUUAGUCACUUUUGAAGGCAGAAAGAUUGCACUACUAAAAGUCAUGGGGAGAAGGAGAAAAGAGCUCCUGUCUUUUAAGAUGGGCUAAUUGCGAAGUGGGAUGCACUCUGCAGCAAAGAUGCCCCUCUUUGCAUAAAGGGAGCACCCCUUCUUUCUGUUUGCUAGGGAGGGGUUUUUUGGCCACUUAGGAUUCCUUAAAAACAAAUGUGAGGUGCCAAGGGAAAGUUGGAGCCCCAUAAAAGGGGCAAACUCCGGCUUUGUAUGAAAAGUUCCUCAAAGCAUUUUUCGCAGUGGCUUCCCCCUUUUUCUUUUUAUUAGUCAAGCAUAACAAUCCCUUGCUUUCUACUGCCAACACAUUUGCUCAUUCUUUGUACUAGUACCAAAAGAAUUUUAUGACUGUACUGCCUCUCUACUGUUCCAUGUGUUCAUAAGCAUUAGGUGCCUUUUUUUCCACUCAAGGACUUGCAUGCAUUGCAUGAUAACGAAAAGAUUCUCCAAUUACAAAAGAAGGGGCUCUGAACUGAAGUGACAUGUGCAAAAGCUUCUUUCAGCAACGAUUUGUGUCCCAUUUCUGAUAAACGAAAAACAAUACGGUCCAUCAUAAGUUAAUGACUUUGUAGAUAACCCCUUGCUAUUGGAUUGUGUUUGCUACUACUAAUGAACAGCCCAACAUAAGAGGCAGAAACAAGAUAAAGGCCCAGACCAUUUAGGCCUCAUUUGGAAGGGCCUUAAUCCAGGCCCAUCCACAUGUGAUGGGCUGGGAUUUCGUCCUAUCCAAACAAGGCAUUAAUUUCGUACUGUGCAACAGAGGGAUCAG


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

382

LEP:

77.64%

ME_num:

80

MEP:

16.26%

HE_num:

29

HEP:

5.89%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

coleoptile

Tau :

0.85

Avg Expression:

5.77

Tip: OSA-LNCN3367 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN2.036979607764051.09430125224992e-16
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN2.509125659794491.05304973083325e-30
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1.868925115641861.28084271645177e-13
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA3.231597225473521.33191583581156e-39
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN1.336177772147054.76453416390839e-06
6Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA1.814383169554981.55028192809416e-12
7Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min"5.20812707050820.0112792852324554
8Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"4.186879102467035.30310187619832e-06
9Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min"5.986898761031210.00236316729591982
10Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN2.647216678125641.67887627153549e-38
11Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA1.999097745146148.10577580427294e-15
129L136 // leaf // control--/--9L136 // leaf // salt1.930458771861560.00119659100086172
13Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA1.281206297525312.02623535985412e-07