Chr:
Chr2
Start:
33441441
End:
33442383
Strand:
+
Ref_name:
OSA-LNCN3366
Sequence
(OSA-LNCN3366.1):
CACAGUUGAAUUGUUCCUCUCAGCUGGGGCGCAUUGUACUCUUUGCUGCAAGUGCACUGCAUCAUCAUCAUAAGUCAGCUCAUACACACACACAUGAGAAGGCCGUGUCUAUUUAUUGUAGAUGCACACUGUUCACAAACUCAAUUCAUACACCUCCACGAAGCAAGCAGCCCAUUCGGGCCCACAUGUCAGCACAGGACGGCCUGCGUACAGCAUCACCACAUUGAUGGAGGCGACACCCUCUUGCCCCUUUCGCCGACCUACAAAUCUAUCCAUUUGCAAGCAAUUGUCACUCUCUGCACAACAGAAGCAGAGGGCCCUUCGCGGCUGCGUCCCCUGUUCUUCUUGUUCUUUUUCAUGCUUUCCUUUUACUACGUGAAAAUUAAGGAUGUCACGCUAAAAAAAAAUGACCCAAAUCUAUCGAUGCAUGCAAAGUAGUAGUAGUGCCAUCCCUACAGGGGCCCCAAAAAUAAUGAACUGGGAAAGGGAAAAGGAGAAGAGAAGAAAAGCACAGGUUCAGAAGCAAUAUACUACUACUGGUAGCAAAGUGAGACAAAGAAUAAAGAGAGCAAUUCAUGAUUUCAUUCGAUCAUUCUCCCCUCAAAACCACCAGAGAGAAAGGAUCAGGAUUCAGGAAGAGGAGGAGGAAAAAAUAAAGUUGAUUUGGUUCCCAUUUCAAGAUUUGCUUGCUCCAACCAUUCAUGAUCCAUCCAAUCCAAUCCAAUCCACCCCCCACAAUUUGCAGAAUCCAAGAAGCCAGCACAGCAAAGCAUCACAAUGUUGUUUUGUCACCAUCUUCUCCUCCUCCUCCUGCAACUGGAGCAGAUGGACACCACCACCUACUACUACUACUACUUCUACUGCUCCAAUGAUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.63%
ME_num:
MEP:
64.63%
HE_num:
HEP:
33.54%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.72
Avg Expression:
14.75
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.07380779746594 | 0.00199266604537607 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.24710434982918 | 0.000242897143720282 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.45834824131666 | 0.00021990322261559 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.01323369248043 | 0.000685975988023707 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.86943153361054 | 7.87093903782814e-08 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.79662790623559 | 1.76101011548815e-14 |
| 7 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 2.21565012670737 | 0.0365525209115212 |
| 8 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 1.95014153611291 | 0.00432881875555096 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.36754917141753 | 0.0236335492856607 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 1.64493473562332 | 0.00141039044164117 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.32583044057868 | 5.7230660357328e-08 |
| 12 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | -1.21260621409069 | 0.0468265243358314 |
| 13 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | 3.14093063558798 | 2.28276445779457e-23 |
| 14 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 3.79915358921616 | 8.17397342268951e-41 |
| 15 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.94433508296551 | 7.42395737161518e-05 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 1.77304404795343 | 0.00160857477691438 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.42760160190799 | 0.00160356910641771 |
| 18 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 4.75841893422003 | 1.27011302321511e-11 |
| 19 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 4.75834252329248 | 1.33194864338653e-11 |
| 20 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 4.75820703312809 | 1.28617902080602e-11 |
| 21 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.0644471808923 | 0.0031165797659295 |
| 22 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.36586815805438 | 2.11782727126244e-05 |
| 23 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.29390116034181 | 0.00027801408589154 |