Chr:
Chr2
Start:
33281283
End:
33296283
Strand:
-
Ref_name:
OSA-LNCN3364
Sequence
(OSA-LNCN3364.1):
CUUGCUCAGACUGCUCCGUCCCUCUGCAUCUUUCAGGUGCGUCAUGCGUGCGUGCGUCUCGCCGGCUCGCCGCUGUCCAUGUGUUCCCCGUGCAGUUGAGCGCGAUGACGAUGUCGCCGUCGACGCCGUGGGCGAUGUUCUCGAGCACCGCCGGUGCCGCGUCCUCCUCCGAUCCUCCACUGGGUGAGGUUGCACACGGGGAAGAUGACGGUGCAAGCAGCCAAGCAGGCACCGACGAGAGUACAAGUCGGCUCAGGUGAGCACGCCGAGCAGCAGCGAACAGAAGUGAUGGUUUGUUGCCUUGUUGCCGUCGGCAGGCCACCAACGCUGGGCGGCGGGAUUUUUCACGACGGGGAGGAAGAAAUCAAUGUGGGAUGAGAAGACAGCGAAAUGGACCAUGGCCCAUGGGCCGGGAAAGGGAGCACUUGAGAGAGAGGCCAGAGGGCCAUGGCAUCAAACCCUCAUUUCAAUCGGUUAAUAUGUAUGGGUCUGUUUGGCACAGCUCCAGUUUUAGAAGAAAUGGAGUUUGAGCUUAGCCAAACAGUUUCAGCUCUAUCUAAAAUGGGAGCAAAGCUAGGUGGAGCGUUCUCACAGAAUGAACUAGAGAGGUGGAGCUGGGUUUAGACUGUUCCACAACUCCACUCUAGACCCAACUCAAUUUAGGAGUUGGAGCUCUACUAAACAGAUCCUAGUCCCUCCGUCGUAUAUUGAUGUAACAUCGUAGUACUACGAAUUUGUAUGUGUUCAUGUUUAGAUUCGUAGUAUUAGAAUAUGUCACAUCGAUGUACGAGGUUGGUUUAUUUUAGAAUGGAGGGAGUAUGCCUCAAUACUAUUUUUGUGGAUUCUUUCCGGUAGGAUUUCGUGUUGAAACUAGAUCUCAUACAAGACUCGGGUCUUGCUGCUCUCUCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
48.58%
ME_num:
MEP:
45.93%
HE_num:
HEP:
5.28%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.83
Avg Expression:
7.97
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.97773741292179 | 0.0428822846297296 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 4.7425789062339 | 2.33977988892562e-05 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 5.01196509088563 | 7.85865402957598e-06 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 4.22571685439053 | 0.000191984066505219 |