Chr:
Chr2
Start:
33137527
End:
33145088
Strand:
+
Ref_name:
OSA-LNCN3362
Sequence
(OSA-LNCN3362.1):
CUGCCUUUGAUCGAUGAAAAAGAAGAAAACUUUAAUUUCGAGAGGCAGCUCUCCUCUCCUCCUCCAAUGGCGAGAGAGAGGCUAGGGCCUAGCUAGCUCUAGCCCUAGGAGAAGAACUGAAGAAGGAGGGGUGAGCAAACCGUGCUGGAGAAGCAGGGCACGUGCUCGACGGCGGGGCUGGCUGGCCGGCCGGCUUGCAGCAUGUGCGCUCCUUCUCCAGCAUGGCUUCUCGCCCCGUCGAUCGCCGCGGCGGCGCCGCCAUUAGAGUGGGGGCUUGAGCUCGUGAUCGAUCGAGCUAAGUAGCACGUCCAUGGAUGGAUGGAUGGAUCGGCCAUCGAAAUUCGCCGAUGCAUUGUAAGUAGAAGUGUUCUAAGUGUUGUUUAUGUUUUCUUGAUUGGAUCUUAUGAAUGCAGCUGAUACCUAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
49.39%
ME_num:
MEP:
46.14%
HE_num:
HEP:
4.27%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.95
Avg Expression:
12.52
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 4.22836360117658 | 0.0289753614106621 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.9319409296097 | 0.0384770574235724 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.75799214587014 | 0.0143299386326225 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.27256284992444 | 0.0231993652840836 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -1.97196739905134 | 0.00890771962410694 |
| 6 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.91329605755244 | 5.37683675676948e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.23885429451872 | 0.0178473046080084 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.48741540316818 | 0.0058873832114885 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 9.51205892179288 | 8.59787275500271e-12 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 5.03373216823298 | 0.000415964342065008 |