Chr:
Chr2
Start:
33083460
End:
33093953
Strand:
-
Ref_name:
OSA-LNCN3361
Sequence
(OSA-LNCN3361.1):
AGAUCGAGUUAGUUCCAUCGAAAGUUAUACUUUUCCUCAAAGUUUGUACAGUAGCAUCUAUUAAUAGCAUGUAGUUAUAUGUAAGCAAAGUAUGCUUAUGGACAGACAAGGUGGGUAUCACUGUGAGCAAAGCAAGACCUAGAACUUAGAUGCAUGUUCCUGAACAAGAAAAAAGGAACUUGCAGAGAGCUAGCUACUGAUUUUCAUACUGUCCUCGUUAAGCAUGACAAAGUGACAAAGACUUUCAGAGAGAGAAAGCAAAGAUGCAGGUGAGGGAAGCCAACAGUGUUUGAUGUUGGUUGGUCCUACACGCAUGGAAAGCUCAGUGAGUAUAUAGACGGUUCCUAUACGGCAGAAACCAUGAGAUGCUUCUACACAUGUACAAGCAGAUUUACCUCCAACAAAACACACAUGUACGAUCAGAAGGCAACGAAUGAUAAGAAGUAUGUUUAAUUUACUACUUCAUAUAGUGUCUUAUUAGAUGCACUAUAUUUGGUGAUAAACUGAUAAUCCUAGCCGUCUCUCCCAGCGGAAGUGCACAAAUGAGUACUGUUCCUAGCAUGCAUGUUUGUUACAAUGUUUUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.42%
ME_num:
MEP:
18.09%
HE_num:
HEP:
80.28%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.38
Avg Expression:
10.18
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.37677163553505 | 0.0101056841615822 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.51136144093969 | 0.00167140401496287 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.28649199409302 | 0.0318496710216647 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.32742378730044 | 0.0192592634132935 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.07222228589346 | 1.51333718680418e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.25854140296284 | 0.0129970813091148 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.02916147276884 | 0.0115134224237497 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.0991928355137 | 0.000476307807045139 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.70910272071519 | 0.000644202994140218 |