Chr:
Chr2
Start:
32796379
End:
32798149
Strand:
+
Ref_name:
OSA-LNCN3357
Sequence
(OSA-LNCN3357.1):
ACCAAAAUCAACUCGAAAAUUAAGUUUUCAAUUCAAAUUAUUGCUUAUGCUUAUAAGCAGGUAUCACUCAUGCGUAGCAAGCAAUGUUUUAAAUUUACCUCCACAAAUUUAUGUCAAUAUCUUGUCCCUUCUACCUAGUUUUUCAGGAAUACAUAUUUAGUUGCUUCUUGAAGAUACUACUAUCUGUUUAGUGAAUCAGCCAGGACAGGACAUGAAUCUUGCGUUUAUCAACAAGCUUCUUAUUUACUACGUUUAGGCAAACAAAACAAAAUAAAAUUUUCUACUUUCUGAAAUGGCCCGACUGCUAGGUACUACAAGUGUUGAUGUUGUCCAAUUUAAGAAGCACACAUGGAUACAUAUUUGUGCAUGUUUCAGUGUGGAAAUUUGCACAUGUGCUUCACCAGGGCUUGAAUGUGGUACAUUCUGAGUUUAGUGAGUGCUUUGGACUCUCAAAAAGGUCAAGAAAAUUCUACUCCCUCCAUCCCAAAAUAUAGCAACCUAGGACUAGUCGCUAAAUUUUGGGACGGAGAGAAUAGUUAAAAUGAUCGGUUUCAAAAAAAGAAUAGUUAAAAUGAAUGGUCUAACACAAAAAUGUUUGAGGGCAGCAUUGUUUCUUUGUAACUAGAGGUUGUACUUAUGCUAACAUUGAAGAAGAUGCUUGCCAAAGAAAUAAUAUUCCUCCAAUCUUUCUAAUUGAUGUCUUAAUUGAAACUAAUAAACUCAUCUAAUAUGCUAGAUAAUAAAUGCACGUGCCACAAAAUGAACUGUUUGUUCAAUGUGCCAACUGCCAAGUUCAUAAUGUCUAUCUUGGUGUUUUCCUCGAGUAAGCCUCAGAUAUGACCCAAGUUUAGCUAAUUGGCAGAGCUAAAACACACAAGAUUUCAUUGAUCUGUCAUUUUAAUUCUUAAAAGUCGGAAAAAUACAGUUCCUUUGUCCCAUAUUUAGCUAUGUUUUGUAGACAAAGAUCAACAAACCAAAAACUUCCUUCAGAAAAAAAAAAGCAAGACUGUCAUGUACUGUAUAUGAAUAGCACUGGGAAAAUACAACCGAAGCAAAAUAUACCAAAUAAAUCCAUACAACACAACCUAAAGAUACAACAAAUAUAAAGAGUAUUAACCAGCAGGAAAUUAUCUAUAGGAACACACAGAAUAGGUGGACUGAAUUUCUAUAGUCCGAGUAUAUCAUCACUUCAUCAGUCAUCAACACAUCACUCGUCCUCAAAUAUGGUCGAGAGAAAGGCAGCACUAGAAAUGUUCCCACAUCAAGUGAUAAACACAAGCUUAUAUGAUGAUGAUAUAUGAUCUAAAUUCCCAAGAACAUGCAUGACAACAACUGCUGCCAUCGAGUCUGACACUGAGACUUGAGAGAUCCUCCCUAGAGCCCCAAAGACAUCCAAUAGUAGCCUUACAAGCCACACACGACUAGUCAACAAUCUCCAUACUCAAUCAAUCUUUGUGCCAAAACGACAUGCAUCCAGUCAAAUCCACAAACACUAAGCGUAAUAAGCCUCGGCAUCAAGAAUAUGCUCCAUUACAAUCCUAUAAAAGAAUCGUUCUUUGACUACGAAAAGUCAAGCAUGACAAACUACCCAGGAGAUUGGAGAUCAAGAACACGCACUCAAACAAACAUAUGCUCCAAGAAACCAAGAUUACCCAGUGGUCUCAGCACUUGCACAAGAUCAGGGGUAUAGCUACUGCUACAUCGUCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
39.43%
ME_num:
MEP:
56.91%
HE_num:
HEP:
3.46%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.84
Avg Expression:
3.25
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.86622395550225 | 1.01488924066802e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.50293960406956 | 6.26095485006459e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.87766482668909 | 0.04227969202307 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.42354145793525 | 1.60049873903794e-06 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -2.74633450849418 | 0.0443626374860649 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.48398220455969 | 0.0134790666306646 |
| 7 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.05306911653319 | 0.0373349835276661 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.76125370696629 | 0.00114889209100733 |
| 9 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.09981937122734 | 0.0268180125378813 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.87923170814117 | 1.56658169708597e-09 |