RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN3356

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

32799753

End:

32821294

Strand:

-

Ref_name:

OSA-LNCN3356

Sequence
(OSA-LNCN3356.1):

AGGAGUUGCCUCCUAAUGUCCCAUAAAAAUUCCUCGUGUGUCUCUUUCCUGGUUUUGGGCGCUUCGGAUCAAUCCACUUUGGGCUAGAAGAAGCUUAUGCUUGCUAUCUAGUGAAUGAGUAAGUUGAGCUGAGAGCUAGGGGUUUGAACAAGCUAUUGAAUCUGUCAUUCUUCAGAAACAAGUUCAUUUAAUCCGGUAUGCUGGAUAACUGCACAUCAAGCUUGAAUCAUGGUGUCUUAUCAGUUCCGGUUUGGUUGAACUAAAUCUGGGACAGGUUUUUUUAGCAAUAUGUCUCCGGCAUAUGACCAUUGCUGGGUUGUGAGCUGGUUACUUUCUUGUAUGGGCUAAUGUUCUUUGGAGUUUGGAUUUGACACACGUCCAGAAAAACUUCAAAUAACCUUUGAGGAAUGCAAGUUGAAGAACCUGAAAAAUGCAUGCAGUACGGAACAAUCGAAAUGCUGGCUGCUUUAUUUCCAGGAAUUGAGACUUGUGGAGUCGGAAAGCAGGUGUUCAUGAUUUUACGUACAAUUUUUAAGUAGUUUCUGUUCUCUUAUGCUGGUAAC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

482

LEP:

97.97%

ME_num:

9

MEP:

1.83%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.99

Avg Expression:

0.36

Tip: OSA-LNCN3356 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN-4.591371451899540.0208814528998415
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-4.694797657284680.0134642282964122
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-4.843476031441710.0100213970196971
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN-4.085377851449290.0467872542500782
5Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-4.955412921462380.00744859705270966
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-4.657520969639270.0115378408560762
7Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-5.13572888333310.00488015346711025
8Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-4.546769332955770.0214240414612804
9Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-5.277192777928890.00258677776761489