Chr:
Chr2
Start:
32682712
End:
32683665
Strand:
-
Ref_name:
OSA-LNCN3349
Sequence
(OSA-LNCN3349.1):
CUUCUCUCUUUCUUUCUCUUUCUCUUUUCUCCCCUUUGGCUGGCCGAGAGGAGAGGAGAGCAGGUGAGGGAGGAACGGAGGUGGUGGGUUACACGAGAGGCGGCGGUGGCGCGUGAGGGCCGGAAGGGAGAGGGGAGAAGCGGAGCCGCCGAGCUCAUGUUGUCGCUGCCGGUGCCUCCUCCCGCACUCGUGCUCGCCCGCACACCGCCGGAGCCCUGCCGCUCGACCCGCUCGAUGCCUCCGCCGUCGACGUCCCGCGCCCGCCGCCGCCGUCGACGUCCUGCACCUGCCGCCGCCGGUGCCUCCUCCCGCACUCGCGCUCGCCCGCACGCCGCCGGAGCCGCCGCUCAACCCGCUCGAUGCCUCCGCCGUCGACGUCCCGCGCCCGCCGCCGUCGACAUCCCGCGCCCGCCGCCGCCGUCGACGUCCCGCGCGAUGCGAGGAUGGAUGCAGGGAGGUGUUGGAGGAAGGCGACGAGGAGCUCUGAUCCCGGCGAUGCGGAUGGAUCCGAAGCUGUAGCCGGCCCAUAGACCACCGUCCCCCCGCUCGAUCUCGUCGGCGUCGGCGCUGUCGUCCUCUCUCGCGUAGCUCUAGCUCGCCGCCGCUUCAGCUCUCGCCGACCGCCACCAAUCCGGCCCACGCCCCACGCUGCCAACUCCAGCCCACCGCCGCCGCCGCUGCUCCAGCUAGCUCCGGCCGCCGCCGCUCCAGCUAGCUCUCGACGCCGCCGCCGCCGCCGCUUCAGCUCCCACCGGUCGCGUCGCUUCAGACCCCGCCCACCGCCGCUCGCUCCCCGCAGACGCCCGAAGUGGAGAGGUAGAACAAAAAGAGAGAAGGGAGGAGGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
47.15%
ME_num:
MEP:
43.09%
HE_num:
HEP:
9.55%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.87
Avg Expression:
8.03
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.86946315475586 | 0.0330311536870136 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.67779473411993 | 0.000643875405471855 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.39221401719898 | 0.0062004666398336 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.26684946769967 | 0.0424979384107143 |
| 5 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 5.38160125326676 | 1.75222260038266e-08 |